5 items (Sorangium cellulosum So01572) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AGP34356.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (338 aa)
	AGP36886.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (413 aa)
	bamD	Hypothetical protein; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane. (286 aa)
	AGP32462.1	Conjugal transfer protein TraR; Derived by automated computational analysis using gene prediction method: Protein Homology. (120 aa)
	AGP37838.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (791 aa)

Your Current Organism:

Sorangium cellulosum So01572

NCBI taxonomy Id: 1254432
Other names: S. cellulosum So0157-2, Sorangium cellulosum So0157-2

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AGP32462.1	AGP34356.1	SCE1572_22740	SCE1572_07455	Conjugal transfer protein TraR; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.409
AGP32462.1	AGP37838.1	SCE1572_22740	SCE1572_27185	Conjugal transfer protein TraR; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.664
AGP32462.1	bamD	SCE1572_22740	SCE1572_21770	Conjugal transfer protein TraR; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.	0.634
AGP34356.1	AGP32462.1	SCE1572_07455	SCE1572_22740	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Conjugal transfer protein TraR; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.409
AGP34356.1	AGP36886.1	SCE1572_07455	SCE1572_21745	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.912
AGP34356.1	AGP37838.1	SCE1572_07455	SCE1572_27185	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.676
AGP34356.1	bamD	SCE1572_07455	SCE1572_21770	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.	0.641
AGP36886.1	AGP34356.1	SCE1572_21745	SCE1572_07455	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.912
AGP36886.1	AGP37838.1	SCE1572_21745	SCE1572_27185	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.938
AGP36886.1	bamD	SCE1572_21745	SCE1572_21770	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.	0.975
AGP37838.1	AGP32462.1	SCE1572_27185	SCE1572_22740	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Conjugal transfer protein TraR; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.664
AGP37838.1	AGP34356.1	SCE1572_27185	SCE1572_07455	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.676
AGP37838.1	AGP36886.1	SCE1572_27185	SCE1572_21745	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.938
AGP37838.1	bamD	SCE1572_27185	SCE1572_21770	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.	0.976
bamD	AGP32462.1	SCE1572_21770	SCE1572_22740	Hypothetical protein; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.	Conjugal transfer protein TraR; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.634
bamD	AGP34356.1	SCE1572_21770	SCE1572_07455	Hypothetical protein; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.641
bamD	AGP36886.1	SCE1572_21770	SCE1572_21745	Hypothetical protein; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.975
bamD	AGP37838.1	SCE1572_21770	SCE1572_27185	Hypothetical protein; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.976