54 items (Sorangium cellulosum So01572) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AGP33029.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (1007 aa)
	AGP33527.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (318 aa)
	AGP33583.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (526 aa)
	AGP33770.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (186 aa)
	AGP34069.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (373 aa)
	AGP34400.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (88 aa)
	AGP34433.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (1188 aa)
	AGP35421.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (974 aa)
	AGP36126.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (423 aa)
	AGP36168.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (231 aa)
	AGP36177.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (553 aa)
	AGP36178.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (1282 aa)
	AGP36179.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (478 aa)
	AGP36181.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (788 aa)
	AGP36215.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (678 aa)
	AGP36249.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (201 aa)
	AGP36250.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (188 aa)
	AGP36251.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (209 aa)
	AGP36254.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (193 aa)
	AGP36379.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (314 aa)
	AGP36550.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (322 aa)
	AGP36940.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (275 aa)
	AGP37089.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (440 aa)
	AGP37188.1	Hypothetical protein; Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic. (91 aa)
	AGP37354.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (441 aa)
	AGP37847.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (932 aa)
	AGP37923.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (803 aa)
	AGP38528.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (295 aa)
	AGP38533.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (740 aa)
	AGP39301.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (482 aa)
	AGP39305.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (790 aa)
	AGP39310.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (906 aa)
	AGP39881.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (282 aa)
	AGP40330.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (477 aa)
	AGP40613.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (879 aa)
	AGP40886.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (548 aa)
	AGP41124.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (529 aa)
	AGP41160.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (1018 aa)
	AGP41327.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (242 aa)
	AGP41817.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (542 aa)
	AGP41901.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (431 aa)
	AGP42241.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (974 aa)
	AGP42282.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (492 aa)
	AGP42283.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (500 aa)
	AGP42284.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (239 aa)
	AGP42285.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (225 aa)
	AGP42286.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (233 aa)
	AGP42287.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (134 aa)
	AGP42288.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (137 aa)
	AGP42289.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (866 aa)
	AGP42291.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (324 aa)
	AGP42310.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (594 aa)
	AGP42323.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (286 aa)
	AGP42385.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (321 aa)

Your Current Organism:

Sorangium cellulosum So01572

NCBI taxonomy Id: 1254432
Other names: S. cellulosum So0157-2, Sorangium cellulosum So0157-2

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... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AGP33029.1	AGP33527.1	SCE1572_00060	SCE1572_02800	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.614
AGP33029.1	AGP33583.1	SCE1572_00060	SCE1572_03150	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.755
AGP33029.1	AGP33770.1	SCE1572_00060	SCE1572_04210	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.651
AGP33029.1	AGP34069.1	SCE1572_00060	SCE1572_05875	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.764
AGP33029.1	AGP34400.1	SCE1572_00060	SCE1572_07705	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.735
AGP33029.1	AGP34433.1	SCE1572_00060	SCE1572_07875	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.748
AGP33029.1	AGP35421.1	SCE1572_00060	SCE1572_13335	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.757
AGP33029.1	AGP36126.1	SCE1572_00060	SCE1572_17440	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.758
AGP33029.1	AGP36168.1	SCE1572_00060	SCE1572_17720	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.766
AGP33029.1	AGP36177.1	SCE1572_00060	SCE1572_17765	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.771
AGP33029.1	AGP36178.1	SCE1572_00060	SCE1572_17770	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.773
AGP33029.1	AGP36179.1	SCE1572_00060	SCE1572_17775	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.768
AGP33029.1	AGP36181.1	SCE1572_00060	SCE1572_17785	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.765
AGP33029.1	AGP36215.1	SCE1572_00060	SCE1572_17995	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.577
AGP33029.1	AGP36249.1	SCE1572_00060	SCE1572_18180	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.769
AGP33029.1	AGP36250.1	SCE1572_00060	SCE1572_18185	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.772
AGP33029.1	AGP36251.1	SCE1572_00060	SCE1572_18190	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.519
AGP33029.1	AGP36254.1	SCE1572_00060	SCE1572_18210	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.765
AGP33029.1	AGP36379.1	SCE1572_00060	SCE1572_18910	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.681
AGP33029.1	AGP36550.1	SCE1572_00060	SCE1572_19850	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.620