35 items (Sorangium cellulosum So01572) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AGP33029.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (1007 aa)
	AGP33583.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (526 aa)
	AGP34069.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (373 aa)
	AGP34400.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (88 aa)
	AGP34433.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (1188 aa)
	AGP35421.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (974 aa)
	AGP36126.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (423 aa)
	AGP36168.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (231 aa)
	AGP36177.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (553 aa)
	AGP36178.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (1282 aa)
	AGP36179.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (478 aa)
	AGP36181.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (788 aa)
	AGP36249.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (201 aa)
	AGP36250.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (188 aa)
	AGP36251.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (209 aa)
	AGP36254.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (193 aa)
	AGP36940.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (275 aa)
	AGP37354.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (441 aa)
	AGP37847.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (932 aa)
	AGP37923.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (803 aa)
	AGP38528.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (295 aa)
	AGP39301.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (482 aa)
	AGP39305.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (790 aa)
	AGP39310.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (906 aa)
	AGP39881.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (282 aa)
	AGP40613.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (879 aa)
	AGP40886.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (548 aa)
	AGP41124.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (529 aa)
	AGP41160.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (1018 aa)
	AGP41327.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (242 aa)
	AGP41817.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (542 aa)
	AGP41901.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (431 aa)
	AGP42241.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (974 aa)
	AGP42310.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (594 aa)
	AGP42323.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (286 aa)

Your Current Organism:

Sorangium cellulosum So01572

NCBI taxonomy Id: 1254432
Other names: S. cellulosum So0157-2, Sorangium cellulosum So0157-2

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... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AGP33029.1	AGP33583.1	SCE1572_00060	SCE1572_03150	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.755
AGP33029.1	AGP34069.1	SCE1572_00060	SCE1572_05875	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.764
AGP33029.1	AGP34400.1	SCE1572_00060	SCE1572_07705	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.735
AGP33029.1	AGP34433.1	SCE1572_00060	SCE1572_07875	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.748
AGP33029.1	AGP35421.1	SCE1572_00060	SCE1572_13335	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.757
AGP33029.1	AGP36126.1	SCE1572_00060	SCE1572_17440	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.758
AGP33029.1	AGP36168.1	SCE1572_00060	SCE1572_17720	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.766
AGP33029.1	AGP36177.1	SCE1572_00060	SCE1572_17765	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.771
AGP33029.1	AGP36178.1	SCE1572_00060	SCE1572_17770	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.773
AGP33029.1	AGP36179.1	SCE1572_00060	SCE1572_17775	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.768
AGP33029.1	AGP36181.1	SCE1572_00060	SCE1572_17785	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.765
AGP33029.1	AGP36249.1	SCE1572_00060	SCE1572_18180	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.769
AGP33029.1	AGP36250.1	SCE1572_00060	SCE1572_18185	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.772
AGP33029.1	AGP36251.1	SCE1572_00060	SCE1572_18190	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.519
AGP33029.1	AGP36254.1	SCE1572_00060	SCE1572_18210	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.765
AGP33029.1	AGP36940.1	SCE1572_00060	SCE1572_22055	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.739
AGP33029.1	AGP37354.1	SCE1572_00060	SCE1572_24425	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.765
AGP33029.1	AGP37847.1	SCE1572_00060	SCE1572_27250	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.708
AGP33029.1	AGP37923.1	SCE1572_00060	SCE1572_27710	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.761
AGP33029.1	AGP38528.1	SCE1572_00060	SCE1572_31070	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.768