49 items (Sorangium cellulosum So01572) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AGP40818.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (456 aa)
	AGP40857.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (444 aa)
	AGP40874.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (505 aa)
	AGP41155.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (492 aa)
	AGP41261.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (447 aa)
	AGP41347.1	Porin; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (606 aa)
	AGP42309.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (647 aa)
	AGP38803.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (323 aa)
	AGP39157.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (297 aa)
	AGP39180.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (594 aa)
	AGP39188.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (722 aa)
	AGP39207.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (252 aa)
	AGP39297.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (657 aa)
	AGP39377.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (488 aa)
	AGP39667.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (232 aa)
	AGP39825.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (170 aa)
	AGP40267.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (628 aa)
	AGP40588.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (551 aa)
	AGP40791.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (717 aa)
	AGP36118.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (580 aa)
	AGP35729.1	Cell envelope biogenesis protein OmpA; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (588 aa)
	AGP35662.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (115 aa)
	AGP35056.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (263 aa)
	AGP34773.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (587 aa)
	AGP34627.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (428 aa)
	AGP33800.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (175 aa)
	AGP33131.1	Porin; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (568 aa)
	AGP33113.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (386 aa)
	AGP33092.1	Porin; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (608 aa)
	AGP38209.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (727 aa)
	AGP38507.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (190 aa)
	AGP38534.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (695 aa)
	AGP38779.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (493 aa)
	AGP38853.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (300 aa)
	AGP37946.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (667 aa)
	AGP37868.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (465 aa)
	AGP37852.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (387 aa)
	AGP37368.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (458 aa)
	AGP37198.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (695 aa)
	AGP37183.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (164 aa)
	AGP37174.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (433 aa)
	AGP37173.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (460 aa)
	AGP37161.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (741 aa)
	AGP37153.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (683 aa)
	AGP37034.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (194 aa)
	AGP36865.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (597 aa)
	AGP36733.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (334 aa)
	AGP36707.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (628 aa)
	AGP36136.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (268 aa)

Your Current Organism:

Sorangium cellulosum So01572

NCBI taxonomy Id: 1254432
Other names: S. cellulosum So0157-2, Sorangium cellulosum So0157-2

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... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AGP33092.1	AGP35056.1	SCE1572_00415	SCE1572_11370	Porin; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.444
AGP33113.1	AGP40857.1	SCE1572_00520	SCE1572_44040	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.540
AGP33113.1	AGP41261.1	SCE1572_00520	SCE1572_46285	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.557
AGP33131.1	AGP35056.1	SCE1572_00610	SCE1572_11370	Porin; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.448
AGP33800.1	AGP36865.1	SCE1572_04385	SCE1572_21610	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.439
AGP33800.1	AGP39207.1	SCE1572_04385	SCE1572_34820	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.498
AGP35056.1	AGP33092.1	SCE1572_11370	SCE1572_00415	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Porin; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.444
AGP35056.1	AGP33131.1	SCE1572_11370	SCE1572_00610	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Porin; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.448
AGP35056.1	AGP35729.1	SCE1572_11370	SCE1572_15100	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Cell envelope biogenesis protein OmpA; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.419
AGP35056.1	AGP36707.1	SCE1572_11370	SCE1572_20740	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.414
AGP35056.1	AGP36733.1	SCE1572_11370	SCE1572_20890	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.519
AGP35056.1	AGP36865.1	SCE1572_11370	SCE1572_21610	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.525
AGP35056.1	AGP38803.1	SCE1572_11370	SCE1572_32560	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.430
AGP35056.1	AGP39377.1	SCE1572_11370	SCE1572_35795	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.605
AGP35056.1	AGP42309.1	SCE1572_11370	SCE1572_52105	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.503
AGP35729.1	AGP35056.1	SCE1572_15100	SCE1572_11370	Cell envelope biogenesis protein OmpA; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.419
AGP36136.1	AGP37173.1	SCE1572_17505	SCE1572_23420	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.515
AGP36136.1	AGP37198.1	SCE1572_17505	SCE1572_23580	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.732
AGP36136.1	AGP38779.1	SCE1572_17505	SCE1572_32420	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.434
AGP36136.1	AGP39297.1	SCE1572_17505	SCE1572_35345	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.412