(13 nodes) Protein secretion by the type II secretion system network (Sorangium cellulosum So01572)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AGP37605.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (193 aa)
	AGP37606.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (204 aa)
	AGP42284.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (239 aa)
	AGP42285.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (225 aa)
	AGP42286.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (233 aa)
	AGP42287.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (134 aa)
	AGP42291.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (324 aa)
	AGP42385.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (321 aa)
	AGP33527.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (318 aa)
	AGP35235.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (179 aa)
	AGP35273.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (189 aa)
	AGP35382.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (494 aa)
	AGP36550.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (322 aa)

Your Current Organism:

Sorangium cellulosum So01572

NCBI taxonomy Id: 1254432
Other names: S. cellulosum So0157-2, Sorangium cellulosum So0157-2

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AGP33527.1	AGP36550.1	SCE1572_02800	SCE1572_19850	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.906
AGP33527.1	AGP42284.1	SCE1572_02800	SCE1572_51965	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.824
AGP33527.1	AGP42285.1	SCE1572_02800	SCE1572_51970	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.746
AGP33527.1	AGP42286.1	SCE1572_02800	SCE1572_51975	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.757
AGP33527.1	AGP42287.1	SCE1572_02800	SCE1572_51980	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.635
AGP36550.1	AGP33527.1	SCE1572_19850	SCE1572_02800	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.906
AGP36550.1	AGP42284.1	SCE1572_19850	SCE1572_51965	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.825
AGP36550.1	AGP42285.1	SCE1572_19850	SCE1572_51970	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.742
AGP36550.1	AGP42286.1	SCE1572_19850	SCE1572_51975	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.760
AGP36550.1	AGP42287.1	SCE1572_19850	SCE1572_51980	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.623
AGP37605.1	AGP37606.1	SCE1572_25850	SCE1572_25855	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.955
AGP37605.1	AGP42284.1	SCE1572_25850	SCE1572_51965	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.907
AGP37606.1	AGP37605.1	SCE1572_25855	SCE1572_25850	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.955
AGP37606.1	AGP42284.1	SCE1572_25855	SCE1572_51965	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.928
AGP42284.1	AGP33527.1	SCE1572_51965	SCE1572_02800	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.824
AGP42284.1	AGP36550.1	SCE1572_51965	SCE1572_19850	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.825
AGP42284.1	AGP37605.1	SCE1572_51965	SCE1572_25850	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.907
AGP42284.1	AGP37606.1	SCE1572_51965	SCE1572_25855	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.928
AGP42284.1	AGP42285.1	SCE1572_51965	SCE1572_51970	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.995
AGP42284.1	AGP42286.1	SCE1572_51965	SCE1572_51975	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.959