27 items (Sorangium cellulosum So01572) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AGP39140.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (608 aa)
	AGP33450.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (362 aa)
	AGP33556.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (516 aa)
	AGP33939.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (501 aa)
	AGP34168.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (787 aa)
	AGP34356.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (338 aa)
	AGP34433.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (1188 aa)
	AGP35293.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (146 aa)
	AGP35699.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (461 aa)
	AGP36063.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (416 aa)
	AGP36593.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (128 aa)
	AGP36704.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (599 aa)
	AGP36886.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (413 aa)
	bamD	Hypothetical protein; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane. (286 aa)
	AGP36924.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (355 aa)
	AGP37334.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (280 aa)
	AGP37363.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (320 aa)
	AGP37838.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (791 aa)
	AGP38453.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (132 aa)
	AGP38818.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (832 aa)
	AGP39246.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (421 aa)
	AGP39881.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (282 aa)
	AGP40769.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (369 aa)
	AGP40897.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (413 aa)
	AGP41160.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (1018 aa)
	AGP41677.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (403 aa)
	AGP42107.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (104 aa)

Your Current Organism:

Sorangium cellulosum So01572

NCBI taxonomy Id: 1254432
Other names: S. cellulosum So0157-2, Sorangium cellulosum So0157-2

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AGP33450.1	AGP35293.1	SCE1572_02335	SCE1572_12665	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.764
AGP33450.1	AGP41160.1	SCE1572_02335	SCE1572_45755	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.436
AGP33556.1	AGP34433.1	SCE1572_02960	SCE1572_07875	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.753
AGP33556.1	AGP35293.1	SCE1572_02960	SCE1572_12665	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.708
AGP33556.1	AGP36886.1	SCE1572_02960	SCE1572_21745	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.630
AGP33556.1	AGP38453.1	SCE1572_02960	SCE1572_30610	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.668
AGP33556.1	AGP39140.1	SCE1572_02960	SCE1572_34470	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.643
AGP33556.1	AGP39881.1	SCE1572_02960	SCE1572_38545	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.875
AGP33556.1	AGP41160.1	SCE1572_02960	SCE1572_45755	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.599
AGP33556.1	bamD	SCE1572_02960	SCE1572_21770	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.	0.721
AGP34356.1	AGP34433.1	SCE1572_07455	SCE1572_07875	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.517
AGP34356.1	AGP36886.1	SCE1572_07455	SCE1572_21745	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.912
AGP34356.1	AGP37838.1	SCE1572_07455	SCE1572_27185	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.676
AGP34356.1	AGP41160.1	SCE1572_07455	SCE1572_45755	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.460
AGP34356.1	bamD	SCE1572_07455	SCE1572_21770	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.	0.641
AGP34433.1	AGP33556.1	SCE1572_07875	SCE1572_02960	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.753
AGP34433.1	AGP34356.1	SCE1572_07875	SCE1572_07455	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.517
AGP34433.1	AGP35293.1	SCE1572_07875	SCE1572_12665	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.708
AGP34433.1	AGP36886.1	SCE1572_07875	SCE1572_21745	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.954
AGP34433.1	AGP38453.1	SCE1572_07875	SCE1572_30610	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.668