(48 nodes) Alpha/beta hydrolase fold-1 network (Sorangium cellulosum So01572)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AGP40023.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (450 aa)
	AGP33119.1	Prolyl aminopeptidase; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (286 aa)
	AGP33323.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (231 aa)
	AGP33459.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (272 aa)
	AGP33472.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (387 aa)
	AGP33519.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (315 aa)
	AGP33620.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (327 aa)
	AGP33664.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (399 aa)
	AGP33857.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (305 aa)
	AGP33865.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (270 aa)
	AGP34312.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (264 aa)
	AGP34614.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (299 aa)
	AGP34721.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (280 aa)
	AGP34734.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (361 aa)
	AGP34741.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (352 aa)
	AGP35069.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (326 aa)
	AGP35104.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (333 aa)
	AGP35394.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (326 aa)
	AGP35710.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (318 aa)
	AGP35864.1	Hydrolase; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (300 aa)
	AGP35909.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (256 aa)
	AGP35985.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (549 aa)
	AGP32429.1	Lactonizing lipase; Derived by automated computational analysis using gene prediction method: Protein Homology. (303 aa)
	AGP36803.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (322 aa)
	AGP36830.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (364 aa)
	AGP36932.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (297 aa)
	AGP37233.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (280 aa)
	AGP37247.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (332 aa)
	AGP37299.1	Hydrolase; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (276 aa)
	AGP37336.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (268 aa)
	AGP37490.1	Epoxide hydrolase; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (290 aa)
	AGP37617.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (286 aa)
	AGP38064.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (307 aa)
	AGP38338.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (300 aa)
	AGP38370.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (294 aa)
	AGP38422.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (304 aa)
	AGP38724.1	Chlorophyllase multi-domain protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (307 aa)
	AGP32658.1	Proline iminopeptidase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the peptidase S33 family. (320 aa)
	AGP38789.1	Hydrolase; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (231 aa)
	AGP38838.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (232 aa)
	AGP38928.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (246 aa)
	AGP39712.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (360 aa)
	AGP40885.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (303 aa)
	AGP40925.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (491 aa)
	AGP41432.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (291 aa)
	AGP42001.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (449 aa)
	AGP42061.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (317 aa)
	AGP42398.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (300 aa)

Your Current Organism:

Sorangium cellulosum So01572

NCBI taxonomy Id: 1254432
Other names: S. cellulosum So0157-2, Sorangium cellulosum So0157-2

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AGP32429.1	AGP39712.1	SCE1572_21095	SCE1572_37600	Lactonizing lipase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.923
AGP32429.1	AGP42061.1	SCE1572_21095	SCE1572_50720	Lactonizing lipase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.930
AGP32658.1	AGP33119.1	SCE1572_32370	SCE1572_00550	Proline iminopeptidase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the peptidase S33 family.	Prolyl aminopeptidase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.924
AGP32658.1	AGP33620.1	SCE1572_32370	SCE1572_03365	Proline iminopeptidase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the peptidase S33 family.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.929
AGP33119.1	AGP32658.1	SCE1572_00550	SCE1572_32370	Prolyl aminopeptidase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Proline iminopeptidase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the peptidase S33 family.	0.924
AGP33119.1	AGP33620.1	SCE1572_00550	SCE1572_03365	Prolyl aminopeptidase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.925
AGP33119.1	AGP36932.1	SCE1572_00550	SCE1572_22015	Prolyl aminopeptidase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.434
AGP33119.1	AGP37299.1	SCE1572_00550	SCE1572_24130	Prolyl aminopeptidase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hydrolase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.408
AGP33119.1	AGP38838.1	SCE1572_00550	SCE1572_32745	Prolyl aminopeptidase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.464
AGP33472.1	AGP42061.1	SCE1572_02470	SCE1572_50720	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.523
AGP33620.1	AGP32658.1	SCE1572_03365	SCE1572_32370	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Proline iminopeptidase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the peptidase S33 family.	0.929
AGP33620.1	AGP33119.1	SCE1572_03365	SCE1572_00550	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Prolyl aminopeptidase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.925
AGP33857.1	AGP34721.1	SCE1572_04705	SCE1572_09495	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.468
AGP33857.1	AGP34741.1	SCE1572_04705	SCE1572_09595	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.409
AGP33857.1	AGP35909.1	SCE1572_04705	SCE1572_16205	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.599
AGP33857.1	AGP36803.1	SCE1572_04705	SCE1572_21280	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.548
AGP33857.1	AGP36932.1	SCE1572_04705	SCE1572_22015	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.663
AGP33857.1	AGP37299.1	SCE1572_04705	SCE1572_24130	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hydrolase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.584
AGP33857.1	AGP37336.1	SCE1572_04705	SCE1572_24325	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.522
AGP33857.1	AGP38370.1	SCE1572_04705	SCE1572_30130	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.700