12 items (Sorangium cellulosum So01572) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AGP32630.1	Biopolymer transporter ExbD; Derived by automated computational analysis using gene prediction method: Protein Homology. (148 aa)
	AGP33802.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (166 aa)
	AGP36249.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (201 aa)
	AGP36250.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (188 aa)
	AGP36252.1	Biopolymer transporter; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (189 aa)
	AGP36254.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (193 aa)
	AGP32520.1	Biopolymer transporter ExbD; Derived by automated computational analysis using gene prediction method: Protein Homology. (152 aa)
	AGP32521.1	Biopolymer transporter ExbD; Derived by automated computational analysis using gene prediction method: Protein Homology. (138 aa)
	AGP37635.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (167 aa)
	AGP32629.1	Biopolymer transporter ExbD; Derived by automated computational analysis using gene prediction method: Protein Homology. (145 aa)
	AGP40749.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (151 aa)
	AGP39883.1	Biopolymer transporter; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (187 aa)

Your Current Organism:

Sorangium cellulosum So01572

NCBI taxonomy Id: 1254432
Other names: S. cellulosum So0157-2, Sorangium cellulosum So0157-2

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AGP32520.1	AGP32521.1	SCE1572_25755	SCE1572_25760	Biopolymer transporter ExbD; Derived by automated computational analysis using gene prediction method: Protein Homology.	Biopolymer transporter ExbD; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.835
AGP32520.1	AGP37635.1	SCE1572_25755	SCE1572_26065	Biopolymer transporter ExbD; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.759
AGP32521.1	AGP32520.1	SCE1572_25760	SCE1572_25755	Biopolymer transporter ExbD; Derived by automated computational analysis using gene prediction method: Protein Homology.	Biopolymer transporter ExbD; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.835
AGP32521.1	AGP37635.1	SCE1572_25760	SCE1572_26065	Biopolymer transporter ExbD; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.768
AGP32629.1	AGP32630.1	SCE1572_30800	SCE1572_30805	Biopolymer transporter ExbD; Derived by automated computational analysis using gene prediction method: Protein Homology.	Biopolymer transporter ExbD; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.860
AGP32629.1	AGP33802.1	SCE1572_30800	SCE1572_04395	Biopolymer transporter ExbD; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.772
AGP32629.1	AGP37635.1	SCE1572_30800	SCE1572_26065	Biopolymer transporter ExbD; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.719
AGP32629.1	AGP40749.1	SCE1572_30800	SCE1572_43450	Biopolymer transporter ExbD; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.630
AGP32630.1	AGP32629.1	SCE1572_30805	SCE1572_30800	Biopolymer transporter ExbD; Derived by automated computational analysis using gene prediction method: Protein Homology.	Biopolymer transporter ExbD; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.860
AGP32630.1	AGP40749.1	SCE1572_30805	SCE1572_43450	Biopolymer transporter ExbD; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.743
AGP33802.1	AGP32629.1	SCE1572_04395	SCE1572_30800	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Biopolymer transporter ExbD; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.772
AGP33802.1	AGP37635.1	SCE1572_04395	SCE1572_26065	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.748
AGP33802.1	AGP40749.1	SCE1572_04395	SCE1572_43450	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.689
AGP36249.1	AGP36250.1	SCE1572_18180	SCE1572_18185	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.955
AGP36249.1	AGP36254.1	SCE1572_18180	SCE1572_18210	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.773
AGP36250.1	AGP36249.1	SCE1572_18185	SCE1572_18180	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.955
AGP36250.1	AGP36254.1	SCE1572_18185	SCE1572_18210	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.777
AGP36252.1	AGP36254.1	SCE1572_18200	SCE1572_18210	Biopolymer transporter; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.749
AGP36254.1	AGP36249.1	SCE1572_18210	SCE1572_18180	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.773
AGP36254.1	AGP36250.1	SCE1572_18210	SCE1572_18185	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.777