9 items (Sorangium cellulosum So01572) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AGP37115.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (925 aa)
	AGP34638.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (554 aa)
	AGP34640.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (623 aa)
	AGP36225.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the peptidase M16 family. (431 aa)
	AGP37100.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (454 aa)
	AGP37101.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (480 aa)
	AGP40204.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (176 aa)
	AGP41755.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (597 aa)
	AGP41756.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (550 aa)

Your Current Organism:

Sorangium cellulosum So01572

NCBI taxonomy Id: 1254432
Other names: S. cellulosum So0157-2, Sorangium cellulosum So0157-2

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AGP34638.1	AGP34640.1	SCE1572_09030	SCE1572_09040	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.559
AGP34638.1	AGP36225.1	SCE1572_09030	SCE1572_18050	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the peptidase M16 family.	0.527
AGP34638.1	AGP37101.1	SCE1572_09030	SCE1572_23010	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.983
AGP34638.1	AGP40204.1	SCE1572_09030	SCE1572_40295	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.699
AGP34638.1	AGP41755.1	SCE1572_09030	SCE1572_49075	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.561
AGP34640.1	AGP34638.1	SCE1572_09040	SCE1572_09030	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.559
AGP34640.1	AGP37100.1	SCE1572_09040	SCE1572_23005	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.945
AGP34640.1	AGP41756.1	SCE1572_09040	SCE1572_49080	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.726
AGP36225.1	AGP34638.1	SCE1572_18050	SCE1572_09030	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the peptidase M16 family.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.527
AGP36225.1	AGP37100.1	SCE1572_18050	SCE1572_23005	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the peptidase M16 family.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.543
AGP36225.1	AGP41756.1	SCE1572_18050	SCE1572_49080	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the peptidase M16 family.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.712
AGP37100.1	AGP34640.1	SCE1572_23005	SCE1572_09040	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.945
AGP37100.1	AGP36225.1	SCE1572_23005	SCE1572_18050	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the peptidase M16 family.	0.543
AGP37100.1	AGP37101.1	SCE1572_23005	SCE1572_23010	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.990
AGP37100.1	AGP40204.1	SCE1572_23005	SCE1572_40295	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.477
AGP37100.1	AGP41755.1	SCE1572_23005	SCE1572_49075	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.863
AGP37101.1	AGP34638.1	SCE1572_23010	SCE1572_09030	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.983
AGP37101.1	AGP37100.1	SCE1572_23010	SCE1572_23005	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.990
AGP37101.1	AGP41756.1	SCE1572_23010	SCE1572_49080	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.623
AGP40204.1	AGP34638.1	SCE1572_40295	SCE1572_09030	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.699