9 items (Sorangium cellulosum So01572) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AGP41128.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (413 aa)
	AGP33468.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (444 aa)
	AGP33578.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (326 aa)
	AGP34847.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (885 aa)
	AGP35514.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (225 aa)
	AGP37779.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (240 aa)
	AGP38406.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (621 aa)
	AGP39654.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (389 aa)
	AGP33278.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (213 aa)

Your Current Organism:

Sorangium cellulosum So01572

NCBI taxonomy Id: 1254432
Other names: S. cellulosum So0157-2, Sorangium cellulosum So0157-2

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AGP34847.1	AGP38406.1	SCE1572_10170	SCE1572_30355	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.435
AGP34847.1	AGP41128.1	SCE1572_10170	SCE1572_45495	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.431
AGP38406.1	AGP34847.1	SCE1572_30355	SCE1572_10170	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.435
AGP41128.1	AGP34847.1	SCE1572_45495	SCE1572_10170	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.431