(9 nodes) Polyketide synthase, thioesterase domain network (Sorangium cellulosum So01572)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AGP33713.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (4430 aa)
	AGP33717.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (933 aa)
	AGP35404.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (3675 aa)
	AGP36044.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (1316 aa)
	AGP37410.1	Peptide synthetase; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (3715 aa)
	AGP37473.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (5690 aa)
	AGP38302.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (1809 aa)
	AGP40732.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (263 aa)
	AGP41600.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (1323 aa)

Your Current Organism:

Sorangium cellulosum So01572

NCBI taxonomy Id: 1254432
Other names: S. cellulosum So0157-2, Sorangium cellulosum So0157-2

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AGP33713.1	AGP33717.1	SCE1572_03905	SCE1572_03925	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.766
AGP33713.1	AGP35404.1	SCE1572_03905	SCE1572_13245	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.693
AGP33713.1	AGP36044.1	SCE1572_03905	SCE1572_16955	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.465
AGP33713.1	AGP37410.1	SCE1572_03905	SCE1572_24725	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Peptide synthetase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.661
AGP33713.1	AGP38302.1	SCE1572_03905	SCE1572_29775	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.400
AGP33713.1	AGP40732.1	SCE1572_03905	SCE1572_43365	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.707
AGP33717.1	AGP33713.1	SCE1572_03925	SCE1572_03905	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.766
AGP33717.1	AGP35404.1	SCE1572_03925	SCE1572_13245	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.934
AGP33717.1	AGP36044.1	SCE1572_03925	SCE1572_16955	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.993
AGP33717.1	AGP37410.1	SCE1572_03925	SCE1572_24725	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Peptide synthetase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.785
AGP33717.1	AGP38302.1	SCE1572_03925	SCE1572_29775	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.827
AGP35404.1	AGP33713.1	SCE1572_13245	SCE1572_03905	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.693
AGP35404.1	AGP33717.1	SCE1572_13245	SCE1572_03925	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.934
AGP35404.1	AGP36044.1	SCE1572_13245	SCE1572_16955	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.999
AGP35404.1	AGP37410.1	SCE1572_13245	SCE1572_24725	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Peptide synthetase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.998
AGP35404.1	AGP37473.1	SCE1572_13245	SCE1572_25055	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.990
AGP35404.1	AGP38302.1	SCE1572_13245	SCE1572_29775	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.991
AGP35404.1	AGP40732.1	SCE1572_13245	SCE1572_43365	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.995
AGP35404.1	AGP41600.1	SCE1572_13245	SCE1572_48185	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.991
AGP36044.1	AGP33713.1	SCE1572_16955	SCE1572_03905	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.465