43 items (Sorangium cellulosum So01572) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AGP33635.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (330 aa)
	AGP40861.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (361 aa)
	AGP40010.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (680 aa)
	AGP39532.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the binding-protein-dependent transport system permease family. (717 aa)
	xylF	Xylose ABC transporter substrate-binding protein; Periplasmic substrate-binding component of the ATP-dependent xylose transport system; high affinity; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (364 aa)
	AGP39328.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (808 aa)
	AGP39062.1	Ribose ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (389 aa)
	AGP38993.1	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (434 aa)
	AGP38831.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (541 aa)
	AGP38657.1	Phosphoserine phosphatase; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (834 aa)
	AGP38654.1	Phosphoserine phosphatase; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (825 aa)
	AGP38652.1	Phosphoserine phosphatase; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (824 aa)
	AGP38208.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (470 aa)
	AGP33813.1	LacI family transcription regulator; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (339 aa)
	AGP34045.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (367 aa)
	AGP34051.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (177 aa)
	AGP34052.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (199 aa)
	AGP34053.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (444 aa)
	AGP34535.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (431 aa)
	AGP34536.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (376 aa)
	AGP34719.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (703 aa)
	AGP35170.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (330 aa)
	AGP35175.1	LacI family transcription regulator; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (300 aa)
	AGP35464.1	Phosphoserine phosphatase; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (823 aa)
	AGP35575.1	Sugar ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (374 aa)
	AGP35606.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (746 aa)
	AGP35816.1	Phosphoserine phosphatase; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (820 aa)
	AGP35989.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (368 aa)
	AGP36621.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the binding-protein-dependent transport system permease family. (734 aa)
	AGP36646.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (375 aa)
	AGP33083.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (274 aa)
	AGP37327.1	Sugar ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (346 aa)
	AGP37370.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (429 aa)
	AGP42114.1	LacI family transcription regulator; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (761 aa)
	AGP42100.1	LacI family transcription regulator; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (734 aa)
	AGP42058.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (819 aa)
	AGP42027.1	Sugar ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (339 aa)
	AGP41835.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (377 aa)
	AGP41789.1	LacI family transcription regulator; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (342 aa)
	AGP41646.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (390 aa)
	AGP40983.1	Membrane protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (344 aa)
	AGP33151.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (255 aa)
	AGP33202.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (337 aa)

Your Current Organism:

Sorangium cellulosum So01572

NCBI taxonomy Id: 1254432
Other names: S. cellulosum So0157-2, Sorangium cellulosum So0157-2

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AGP33083.1	AGP41789.1	SCE1572_00370	SCE1572_49260	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	LacI family transcription regulator; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.443
AGP33083.1	xylF	SCE1572_00370	SCE1572_35695	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Xylose ABC transporter substrate-binding protein; Periplasmic substrate-binding component of the ATP-dependent xylose transport system; high affinity; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.912
AGP33151.1	AGP37370.1	SCE1572_00715	SCE1572_24505	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.942
AGP33151.1	AGP39532.1	SCE1572_00715	SCE1572_36605	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the binding-protein-dependent transport system permease family.	0.620
AGP33151.1	AGP41646.1	SCE1572_00715	SCE1572_48460	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.911
AGP33202.1	AGP42027.1	SCE1572_01005	SCE1572_50535	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Sugar ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.488
AGP34045.1	AGP34536.1	SCE1572_05755	SCE1572_08475	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.764
AGP34045.1	AGP35464.1	SCE1572_05755	SCE1572_13570	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Phosphoserine phosphatase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.427
AGP34045.1	AGP35816.1	SCE1572_05755	SCE1572_15665	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Phosphoserine phosphatase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.440
AGP34045.1	AGP35989.1	SCE1572_05755	SCE1572_16655	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.751
AGP34045.1	AGP37327.1	SCE1572_05755	SCE1572_24280	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Sugar ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.730
AGP34045.1	AGP38652.1	SCE1572_05755	SCE1572_31735	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Phosphoserine phosphatase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.427
AGP34045.1	AGP38654.1	SCE1572_05755	SCE1572_31745	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Phosphoserine phosphatase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.430
AGP34045.1	AGP39062.1	SCE1572_05755	SCE1572_34010	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Ribose ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.571
AGP34045.1	AGP41835.1	SCE1572_05755	SCE1572_49505	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.765
AGP34045.1	AGP42027.1	SCE1572_05755	SCE1572_50535	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Sugar ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.566
AGP34051.1	AGP34052.1	SCE1572_05785	SCE1572_05790	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.773
AGP34051.1	AGP34053.1	SCE1572_05785	SCE1572_05795	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.572
AGP34052.1	AGP34051.1	SCE1572_05790	SCE1572_05785	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.773
AGP34052.1	AGP34053.1	SCE1572_05790	SCE1572_05795	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.572