35 items (Sorangium cellulosum So01572) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AGP36733.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (334 aa)
	AGP33092.1	Porin; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (608 aa)
	AGP33131.1	Porin; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (568 aa)
	AGP33276.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (931 aa)
	AGP33579.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (315 aa)
	AGP33800.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (175 aa)
	AGP33989.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (261 aa)
	AGP34402.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (423 aa)
	AGP34773.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (587 aa)
	AGP34937.1	Membrane protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (265 aa)
	AGP35056.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (263 aa)
	AGP35287.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (334 aa)
	AGP35662.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (115 aa)
	AGP35729.1	Cell envelope biogenesis protein OmpA; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (588 aa)
	AGP36118.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (580 aa)
	AGP36707.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (628 aa)
	AGP36865.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (597 aa)
	AGP37034.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (194 aa)
	AGP37852.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (387 aa)
	AGP38507.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (190 aa)
	AGP38534.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (695 aa)
	AGP38535.1	Membrane protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (253 aa)
	AGP38718.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (723 aa)
	AGP38803.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (323 aa)
	AGP39180.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (594 aa)
	AGP39207.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (252 aa)
	AGP39297.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (657 aa)
	AGP39377.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (488 aa)
	AGP39667.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (232 aa)
	AGP39798.1	Membrane protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (274 aa)
	AGP39825.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (170 aa)
	AGP40791.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (717 aa)
	AGP41332.1	Membrane protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (212 aa)
	AGP41347.1	Porin; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (606 aa)
	AGP42309.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (647 aa)

Your Current Organism:

Sorangium cellulosum So01572

NCBI taxonomy Id: 1254432
Other names: S. cellulosum So0157-2, Sorangium cellulosum So0157-2

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AGP33092.1	AGP35056.1	SCE1572_00415	SCE1572_11370	Porin; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.444
AGP33131.1	AGP35056.1	SCE1572_00610	SCE1572_11370	Porin; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.448
AGP33579.1	AGP35662.1	SCE1572_03130	SCE1572_14705	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.782
AGP33579.1	AGP36733.1	SCE1572_03130	SCE1572_20890	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.747
AGP33579.1	AGP36865.1	SCE1572_03130	SCE1572_21610	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.622
AGP33579.1	AGP37034.1	SCE1572_03130	SCE1572_22580	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.788
AGP33579.1	AGP39825.1	SCE1572_03130	SCE1572_38225	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.748
AGP33579.1	AGP40791.1	SCE1572_03130	SCE1572_43675	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.594
AGP33800.1	AGP36865.1	SCE1572_04385	SCE1572_21610	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.439
AGP33800.1	AGP39207.1	SCE1572_04385	SCE1572_34820	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.498
AGP33989.1	AGP35287.1	SCE1572_05450	SCE1572_12635	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.678
AGP34773.1	AGP34937.1	SCE1572_09770	SCE1572_10710	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Membrane protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.779
AGP34773.1	AGP38535.1	SCE1572_09770	SCE1572_31105	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Membrane protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.783
AGP34773.1	AGP39798.1	SCE1572_09770	SCE1572_38075	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Membrane protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.783
AGP34937.1	AGP34773.1	SCE1572_10710	SCE1572_09770	Membrane protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.779
AGP34937.1	AGP35729.1	SCE1572_10710	SCE1572_15100	Membrane protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Cell envelope biogenesis protein OmpA; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.783
AGP34937.1	AGP36118.1	SCE1572_10710	SCE1572_17385	Membrane protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.744
AGP34937.1	AGP36733.1	SCE1572_10710	SCE1572_20890	Membrane protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.689
AGP34937.1	AGP36865.1	SCE1572_10710	SCE1572_21610	Membrane protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.550
AGP34937.1	AGP37852.1	SCE1572_10710	SCE1572_27290	Membrane protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.757