14 items (Sorangium cellulosum So01572) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AGP33657.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (781 aa)
	AGP33763.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (182 aa)
	AGP34356.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (338 aa)
	AGP34928.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (344 aa)
	AGP35238.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (238 aa)
	AGP35787.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (327 aa)
	AGP36226.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (600 aa)
	tig	Hypothetical protein; Involved in protein export. Acts as a chaperone by maintaining the newly synthesized protein in an open conformation. Functions as a peptidyl-prolyl cis-trans isomerase; Belongs to the FKBP-type PPIase family. Tig subfamily. (410 aa)
	AGP36708.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (171 aa)
	AGP32467.1	Peptidyl-prolyl cis-trans isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology. (109 aa)
	AGP32595.1	Peptidyl-prolyl cis-trans isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology. (200 aa)
	AGP40531.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (201 aa)
	AGP40686.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (167 aa)
	AGP40785.1	Peptidyl-prolyl cis-trans isomerase; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (316 aa)

Your Current Organism:

Sorangium cellulosum So01572

NCBI taxonomy Id: 1254432
Other names: S. cellulosum So0157-2, Sorangium cellulosum So0157-2

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AGP32467.1	AGP40531.1	SCE1572_22830	SCE1572_42120	Peptidyl-prolyl cis-trans isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.427
AGP32595.1	AGP40531.1	SCE1572_28550	SCE1572_42120	Peptidyl-prolyl cis-trans isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.486
AGP33657.1	AGP34356.1	SCE1572_03585	SCE1572_07455	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.427
AGP33657.1	AGP34928.1	SCE1572_03585	SCE1572_10655	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.450
AGP34356.1	AGP33657.1	SCE1572_07455	SCE1572_03585	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.427
AGP34356.1	AGP35238.1	SCE1572_07455	SCE1572_12360	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.553
AGP34356.1	AGP36226.1	SCE1572_07455	SCE1572_18055	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.691
AGP34356.1	AGP36708.1	SCE1572_07455	SCE1572_20745	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.552
AGP34356.1	AGP40686.1	SCE1572_07455	SCE1572_43085	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.535
AGP34356.1	tig	SCE1572_07455	SCE1572_18990	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Involved in protein export. Acts as a chaperone by maintaining the newly synthesized protein in an open conformation. Functions as a peptidyl-prolyl cis-trans isomerase; Belongs to the FKBP-type PPIase family. Tig subfamily.	0.476
AGP34928.1	AGP33657.1	SCE1572_10655	SCE1572_03585	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.450
AGP34928.1	AGP35238.1	SCE1572_10655	SCE1572_12360	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.487
AGP34928.1	AGP36226.1	SCE1572_10655	SCE1572_18055	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.460
AGP34928.1	AGP40686.1	SCE1572_10655	SCE1572_43085	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.499
AGP34928.1	tig	SCE1572_10655	SCE1572_18990	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Involved in protein export. Acts as a chaperone by maintaining the newly synthesized protein in an open conformation. Functions as a peptidyl-prolyl cis-trans isomerase; Belongs to the FKBP-type PPIase family. Tig subfamily.	0.454
AGP35238.1	AGP34356.1	SCE1572_12360	SCE1572_07455	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.553
AGP35238.1	AGP34928.1	SCE1572_12360	SCE1572_10655	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.487
AGP36226.1	AGP34356.1	SCE1572_18055	SCE1572_07455	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.691
AGP36226.1	AGP34928.1	SCE1572_18055	SCE1572_10655	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.460
AGP36226.1	AGP36708.1	SCE1572_18055	SCE1572_20745	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.751