19 items (Sorangium cellulosum So01572) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AGP34047.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (804 aa)
	AGP34258.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (732 aa)
	AGP34537.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (729 aa)
	AGP35421.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (974 aa)
	AGP36523.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (913 aa)
	AGP37153.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (683 aa)
	AGP37161.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (741 aa)
	AGP37479.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (713 aa)
	AGP37838.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (791 aa)
	AGP38209.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (727 aa)
	AGP38485.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (975 aa)
	AGP39144.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (884 aa)
	AGP39188.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (722 aa)
	AGP40267.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (628 aa)
	AGP40384.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (871 aa)
	AGP40751.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (905 aa)
	AGP41613.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (902 aa)
	AGP41994.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (702 aa)
	AGP42241.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (974 aa)

Your Current Organism:

Sorangium cellulosum So01572

NCBI taxonomy Id: 1254432
Other names: S. cellulosum So0157-2, Sorangium cellulosum So0157-2

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AGP34047.1	AGP34258.1	SCE1572_05765	SCE1572_06945	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.461
AGP34047.1	AGP37153.1	SCE1572_05765	SCE1572_23315	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.507
AGP34047.1	AGP37161.1	SCE1572_05765	SCE1572_23355	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.483
AGP34047.1	AGP40384.1	SCE1572_05765	SCE1572_41315	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.604
AGP34047.1	AGP40751.1	SCE1572_05765	SCE1572_43460	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.525
AGP34047.1	AGP41613.1	SCE1572_05765	SCE1572_48250	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.589
AGP34047.1	AGP41994.1	SCE1572_05765	SCE1572_50370	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.821
AGP34258.1	AGP34047.1	SCE1572_06945	SCE1572_05765	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.461
AGP34258.1	AGP35421.1	SCE1572_06945	SCE1572_13335	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.415
AGP34258.1	AGP36523.1	SCE1572_06945	SCE1572_19705	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.627
AGP34258.1	AGP37161.1	SCE1572_06945	SCE1572_23355	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.528
AGP34258.1	AGP40384.1	SCE1572_06945	SCE1572_41315	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.546
AGP34258.1	AGP40751.1	SCE1572_06945	SCE1572_43460	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.447
AGP34258.1	AGP41613.1	SCE1572_06945	SCE1572_48250	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.466
AGP34537.1	AGP37153.1	SCE1572_08480	SCE1572_23315	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.439
AGP34537.1	AGP37161.1	SCE1572_08480	SCE1572_23355	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.534
AGP34537.1	AGP40384.1	SCE1572_08480	SCE1572_41315	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.672
AGP34537.1	AGP40751.1	SCE1572_08480	SCE1572_43460	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.573
AGP34537.1	AGP41613.1	SCE1572_08480	SCE1572_48250	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.636
AGP34537.1	AGP41994.1	SCE1572_08480	SCE1572_50370	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.715