11 items (Sorangium cellulosum So01572) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AGP34418.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (577 aa)
	AGP34308.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (408 aa)
	AGP34309.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (433 aa)
	AGP34488.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (447 aa)
	AGP34883.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (718 aa)
	AGP38111.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (400 aa)
	AGP40033.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (388 aa)
	AGP40034.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (388 aa)
	AGP40533.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (406 aa)
	AGP40534.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (410 aa)
	AGP41263.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (706 aa)

Your Current Organism:

Sorangium cellulosum So01572

NCBI taxonomy Id: 1254432
Other names: S. cellulosum So0157-2, Sorangium cellulosum So0157-2

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AGP34308.1	AGP34309.1	SCE1572_07210	SCE1572_07215	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.830
AGP34308.1	AGP40033.1	SCE1572_07210	SCE1572_39375	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.425
AGP34308.1	AGP41263.1	SCE1572_07210	SCE1572_46300	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.430
AGP34309.1	AGP34308.1	SCE1572_07215	SCE1572_07210	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.830
AGP34309.1	AGP40033.1	SCE1572_07215	SCE1572_39375	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.421
AGP34309.1	AGP41263.1	SCE1572_07215	SCE1572_46300	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.499
AGP34418.1	AGP34883.1	SCE1572_07795	SCE1572_10380	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.925
AGP34883.1	AGP34418.1	SCE1572_10380	SCE1572_07795	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.925
AGP34883.1	AGP40034.1	SCE1572_10380	SCE1572_39380	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.420
AGP38111.1	AGP40033.1	SCE1572_28745	SCE1572_39375	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.418
AGP40033.1	AGP34308.1	SCE1572_39375	SCE1572_07210	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.425
AGP40033.1	AGP34309.1	SCE1572_39375	SCE1572_07215	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.421
AGP40033.1	AGP38111.1	SCE1572_39375	SCE1572_28745	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.418
AGP40033.1	AGP40034.1	SCE1572_39375	SCE1572_39380	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.926
AGP40033.1	AGP40533.1	SCE1572_39375	SCE1572_42135	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.423
AGP40033.1	AGP40534.1	SCE1572_39375	SCE1572_42140	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.423
AGP40034.1	AGP34883.1	SCE1572_39380	SCE1572_10380	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.420
AGP40034.1	AGP40033.1	SCE1572_39380	SCE1572_39375	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.926
AGP40533.1	AGP40033.1	SCE1572_42135	SCE1572_39375	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.423
AGP40533.1	AGP40534.1	SCE1572_42135	SCE1572_42140	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.818