21 items (Sorangium cellulosum So01572) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AGP38683.1	Glutathione S-transferase; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (219 aa)
	AGP33209.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the GST superfamily. (206 aa)
	AGP33256.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (219 aa)
	AGP33311.1	Glutathione S-transferase; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (224 aa)
	AGP32088.1	Glutathione S-transferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the GST superfamily. (230 aa)
	AGP33758.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (206 aa)
	AGP32165.1	Glutathione S-transferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the GST superfamily. (216 aa)
	AGP34518.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (238 aa)
	AGP34641.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (207 aa)
	AGP34805.1	Glutathione S-transferase; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the GST superfamily. (220 aa)
	AGP36147.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (244 aa)
	AGP37291.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the GST superfamily. (201 aa)
	AGP32591.1	Glutathione S-transferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the GST superfamily. (205 aa)
	AGP38151.1	Glutathione S-transferase; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (190 aa)
	AGP38380.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the GST superfamily. (221 aa)
	AGP38564.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (210 aa)
	AGP38837.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (352 aa)
	AGP39898.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the GST superfamily. (208 aa)
	AGP39903.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the GST superfamily. (208 aa)
	AGP32785.1	Glutathione S-transferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the GST superfamily. (235 aa)
	AGP40312.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the GST superfamily. (186 aa)

Your Current Organism:

Sorangium cellulosum So01572

NCBI taxonomy Id: 1254432
Other names: S. cellulosum So0157-2, Sorangium cellulosum So0157-2

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AGP32088.1	AGP34518.1	SCE1572_03490	SCE1572_08370	Glutathione S-transferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the GST superfamily.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.421
AGP32088.1	AGP34641.1	SCE1572_03490	SCE1572_09045	Glutathione S-transferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the GST superfamily.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.535
AGP32088.1	AGP38564.1	SCE1572_03490	SCE1572_31270	Glutathione S-transferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the GST superfamily.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.722
AGP32088.1	AGP38837.1	SCE1572_03490	SCE1572_32740	Glutathione S-transferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the GST superfamily.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.661
AGP32165.1	AGP33311.1	SCE1572_08055	SCE1572_01575	Glutathione S-transferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the GST superfamily.	Glutathione S-transferase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.609
AGP32165.1	AGP33758.1	SCE1572_08055	SCE1572_04145	Glutathione S-transferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the GST superfamily.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.474
AGP32165.1	AGP34641.1	SCE1572_08055	SCE1572_09045	Glutathione S-transferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the GST superfamily.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.427
AGP32165.1	AGP38683.1	SCE1572_08055	SCE1572_31900	Glutathione S-transferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the GST superfamily.	Glutathione S-transferase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.588
AGP32165.1	AGP38837.1	SCE1572_08055	SCE1572_32740	Glutathione S-transferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the GST superfamily.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.421
AGP32165.1	AGP39903.1	SCE1572_08055	SCE1572_38670	Glutathione S-transferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the GST superfamily.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the GST superfamily.	0.629
AGP32591.1	AGP33256.1	SCE1572_28375	SCE1572_01285	Glutathione S-transferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the GST superfamily.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.770
AGP32591.1	AGP33758.1	SCE1572_28375	SCE1572_04145	Glutathione S-transferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the GST superfamily.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.435
AGP32591.1	AGP38564.1	SCE1572_28375	SCE1572_31270	Glutathione S-transferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the GST superfamily.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.577
AGP32785.1	AGP33311.1	SCE1572_40270	SCE1572_01575	Glutathione S-transferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the GST superfamily.	Glutathione S-transferase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.557
AGP32785.1	AGP34641.1	SCE1572_40270	SCE1572_09045	Glutathione S-transferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the GST superfamily.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.436
AGP32785.1	AGP38837.1	SCE1572_40270	SCE1572_32740	Glutathione S-transferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the GST superfamily.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.595
AGP33256.1	AGP32591.1	SCE1572_01285	SCE1572_28375	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Glutathione S-transferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the GST superfamily.	0.770
AGP33256.1	AGP33758.1	SCE1572_01285	SCE1572_04145	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.737
AGP33256.1	AGP34518.1	SCE1572_01285	SCE1572_08370	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.603
AGP33256.1	AGP34641.1	SCE1572_01285	SCE1572_09045	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.635