(33 nodes) Phage tail baseplate hub (GPD) network (Sorangium cellulosum So01572)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AGP42298.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (840 aa)
	AGP33061.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (765 aa)
	AGP34160.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (720 aa)
	AGP34321.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (481 aa)
	AGP34370.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (806 aa)
	AGP35451.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (892 aa)
	AGP35584.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (806 aa)
	AGP35746.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (747 aa)
	AGP36360.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (741 aa)
	AGP36361.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (757 aa)
	AGP36362.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (918 aa)
	AGP36405.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (478 aa)
	AGP36442.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (746 aa)
	AGP36443.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (735 aa)
	AGP36444.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (737 aa)
	AGP36485.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (479 aa)
	AGP36736.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (137 aa)
	AGP36737.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (577 aa)
	AGP36821.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (805 aa)
	AGP37812.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (641 aa)
	AGP38313.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (811 aa)
	AGP38442.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (698 aa)
	AGP39232.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (638 aa)
	AGP39405.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (843 aa)
	AGP39618.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (848 aa)
	AGP39620.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (733 aa)
	AGP41053.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (808 aa)
	AGP41502.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (381 aa)
	AGP41656.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (467 aa)
	AGP41812.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (484 aa)
	AGP41963.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (810 aa)
	AGP42272.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (901 aa)
	AGP42302.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (736 aa)

Your Current Organism:

Sorangium cellulosum So01572

NCBI taxonomy Id: 1254432
Other names: S. cellulosum So0157-2, Sorangium cellulosum So0157-2

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AGP35451.1	AGP36736.1	SCE1572_13500	SCE1572_20910	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.774
AGP35746.1	AGP36736.1	SCE1572_15205	SCE1572_20910	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.774
AGP36360.1	AGP36361.1	SCE1572_18805	SCE1572_18810	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.762
AGP36360.1	AGP36362.1	SCE1572_18805	SCE1572_18815	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.740
AGP36361.1	AGP36360.1	SCE1572_18810	SCE1572_18805	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.762
AGP36361.1	AGP36362.1	SCE1572_18810	SCE1572_18815	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.806
AGP36362.1	AGP36360.1	SCE1572_18815	SCE1572_18805	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.740
AGP36362.1	AGP36361.1	SCE1572_18815	SCE1572_18810	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.806
AGP36442.1	AGP36443.1	SCE1572_19270	SCE1572_19275	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.811
AGP36442.1	AGP36444.1	SCE1572_19270	SCE1572_19280	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.820
AGP36443.1	AGP36442.1	SCE1572_19275	SCE1572_19270	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.811
AGP36443.1	AGP36444.1	SCE1572_19275	SCE1572_19280	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.816
AGP36444.1	AGP36442.1	SCE1572_19280	SCE1572_19270	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.820
AGP36444.1	AGP36443.1	SCE1572_19280	SCE1572_19275	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.816
AGP36736.1	AGP35451.1	SCE1572_20910	SCE1572_13500	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.774
AGP36736.1	AGP35746.1	SCE1572_20910	SCE1572_15205	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.774
AGP36736.1	AGP36737.1	SCE1572_20910	SCE1572_20915	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.889
AGP36736.1	AGP37812.1	SCE1572_20910	SCE1572_27035	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.774
AGP36736.1	AGP39232.1	SCE1572_20910	SCE1572_34960	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.774
AGP36736.1	AGP39620.1	SCE1572_20910	SCE1572_37080	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.774