STRINGSTRING
AGA31825.1 AGA31825.1 adrA adrA AGA31886.1 AGA31886.1 bvgS bvgS rpoH rpoH ftsX ftsX ftsE ftsE rsmD rsmD AGA31923.1 AGA31923.1 AGA31925.1 AGA31925.1 AGA31926.1 AGA31926.1 AGA31929.1 AGA31929.1 AGA31982.1 AGA31982.1 AGA31983.1 AGA31983.1 AGA32023.1 AGA32023.1 crp crp yhfA yhfA AGA32140.1 AGA32140.1 amtB amtB AGA32142.1 AGA32142.1 ybbM ybbM glnE glnE dosC dosC algR algR AGA32240.1 AGA32240.1 AGA32242.1 AGA32242.1 AGA32243.1 AGA32243.1 AGA32257.1 AGA32257.1 phoP phoP AGA32259.1 AGA32259.1 envZ envZ ompR ompR AGA32576.1 AGA32576.1 AGA32579.1 AGA32579.1 phoB phoB phoR phoR AGA32616.1 AGA32616.1 AGA32704.1 AGA32704.1 atoS atoS AGA32779.1 AGA32779.1 pcoS pcoS irlR irlR fnrA fnrA AGA32973.1 AGA32973.1 fixJ fixJ AGA33035.1 AGA33035.1 yegE yegE yddU yddU yciK yciK AGA33183.1 AGA33183.1 AGA33184.1 AGA33184.1 AGA33213.1 AGA33213.1 AGA33255.1 AGA33255.1 AGA33418.1 AGA33418.1 AGA33419.1 AGA33419.1 AGA33532.1 AGA33532.1 glnD glnD AGA33668.1 AGA33668.1 crp-2 crp-2 AGA33740.1 AGA33740.1 anr anr AGA33830.1 AGA33830.1 luxQ luxQ AGA34060.1 AGA34060.1 AGA34109.1 AGA34109.1 AGA34128.1 AGA34128.1 degU degU nodV nodV AGA34135.1 AGA34135.1 AGA34136.1 AGA34136.1 AGA34137.1 AGA34137.1 AGA34138.1 AGA34138.1 AGA34139.1 AGA34139.1 AGA34140.1 AGA34140.1 AGA34141.1 AGA34141.1 AGA34142.1 AGA34142.1 gspE gspE AGA34144.1 AGA34144.1 hofQ hofQ AGA34146.1 AGA34146.1 AGA34147.1 AGA34147.1 AGA34148.1 AGA34148.1 pilS pilS AGA34159.1 AGA34159.1 rpoN rpoN narQ narQ AGA34352.1 AGA34352.1 dnaQ dnaQ rnhA rnhA AGA34364.1 AGA34364.1 AGA34363.1 AGA34363.1 AGA34365.1 AGA34365.1 AGA34391.1 AGA34391.1 zraR zraR AGA34529.1 AGA34529.1 AGA34587.1 AGA34587.1 AGA34599.1 AGA34599.1 cmpR cmpR AGA34616.1 AGA34616.1 AGA34617.1 AGA34617.1 AGA34633.1 AGA34633.1 cbbYC cbbYC dksA-3 dksA-3 AGA34729.1 AGA34729.1 atoS-2 atoS-2 AGA34731.1 AGA34731.1 AGA34732.1 AGA34732.1 AGA34733.1 AGA34733.1 yjcG yjcG AGA34735.1 AGA34735.1 AGA34736.1 AGA34736.1 hcaT hcaT yfgF-2 yfgF-2 AGA34823.1 AGA34823.1 AGA34979.1 AGA34979.1 flbD flbD AGA35160.1 AGA35160.1 AGA35201.1 AGA35201.1 AGA35202.1 AGA35202.1 AGA35203.1 AGA35203.1 ykoW ykoW fucA fucA yafJ yafJ AGA35322.1 AGA35322.1 trmL trmL glnG glnG ntrB ntrB AGA35365.1 AGA35365.1 AGA35366.1 AGA35366.1 ygdH-2 ygdH-2 AGA35471.1 AGA35471.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
AGA31825.1Putative LuxR-family transcriptional regulator. (201 aa)
adrAResponse regulator protein with GGDEF domain. (367 aa)
AGA31886.1Response regulator containing a CheY-like receiver domain and an HD-GYP domain. (473 aa)
bvgSPhytochrome, two-component sensor histidine kinase; Cyanobacterial phytochrome B. (731 aa)
rpoHRNA polymerase sigma factor RpoH; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is involved in regulation of expression of heat shock genes. (287 aa)
ftsXCell division protein FtsX; Part of the ABC transporter FtsEX involved in cellular division; Belongs to the ABC-4 integral membrane protein family. FtsX subfamily. (308 aa)
ftsECell division transporter, ATP-binding protein FtsE; Part of the ABC transporter FtsEX involved in cellular division. (227 aa)
rsmDRibosomal RNA small subunit methyltransferase D; Specifically methylates the guanine in position 966 of 16S rRNA in the assembled 30S particle; Belongs to the methyltransferase superfamily. RsmD family. (167 aa)
AGA31923.1Hypothetical protein. (166 aa)
AGA31925.1Hypothetical protein. (39 aa)
AGA31926.1Nitrate/nitrite response regulator protein. (280 aa)
AGA31929.1Large Ala/Glu-rich protein; Identified in proteome by 2DE - MALDI-TOF/TOF MS analysis. (367 aa)
AGA31982.1Nitrate/nitrite sensor protein. (638 aa)
AGA31983.1Nitrate/nitrite response regulator protein. (205 aa)
AGA32023.1Chemotaxis protein histidine kinase CheA domain-containing protein; Similar to ThithDRAFT_1127. (659 aa)
crpCRP transcriptional dual regulator/ cyclic AMP receptor protein. (211 aa)
yhfAOsmC/Ohr family protein. (151 aa)
AGA32140.1Nitrogen regulatory protein P-II; Belongs to the P(II) protein family. (110 aa)
amtBAmmonium transporter. (425 aa)
AGA32142.1ABC transporter related protein. (202 aa)
ybbMYbbM seven transmembrane helix protein. (263 aa)
glnEGlutamate-ammonia-ligase adenylyltransferase; Involved in the regulation of glutamine synthetase GlnA, a key enzyme in the process to assimilate ammonia. When cellular nitrogen levels are high, the C-terminal adenylyl transferase (AT) inactivates GlnA by covalent transfer of an adenylyl group from ATP to specific tyrosine residue of GlnA, thus reducing its activity. Conversely, when nitrogen levels are low, the N-terminal adenylyl removase (AR) activates GlnA by removing the adenylyl group by phosphorolysis, increasing its activity. The regulatory region of GlnE binds the signal transd [...] (978 aa)
dosCDiguanylate cyclase (GGDEF domain). (369 aa)
algRResponse regulator receiver protein. (235 aa)
AGA32240.1Signal transduction histidine kinase, LytS. (350 aa)
AGA32242.1Putative two-component response regulator and GGDEF family protein YeaJ. (496 aa)
AGA32243.1Protein of unknown function DUF323. (294 aa)
AGA32257.1Hypothetical protein. (95 aa)
phoPTwo component transcriptional regulator, winged helix family. (234 aa)
AGA32259.1Sensor protein PhoQ. (433 aa)
envZPeriplasmic Sensor Signal Transduction Histidine Kinase. (443 aa)
ompRTwo component transcriptional regulator, winged helix family. (243 aa)
AGA32576.1Diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s). (1110 aa)
AGA32579.1Diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s). (423 aa)
phoBPhosphate regulon transcriptional regulatory protein PhoB (SphR). (229 aa)
phoRPhosphate regulon sensor protein PhoR (SphS). (444 aa)
AGA32616.1Transcriptional regulator, LuxR family. (401 aa)
AGA32704.1Diguanylate cyclase/phosphodiesterase domain 1 (GGDEF). (328 aa)
atoSPAS/PAC sensor signal transduction histidine kinase. (356 aa)
AGA32779.1Cytochrome c. (152 aa)
pcoSHeavy metal sensor histidine kinase; Member of a two-component regulatory system. (464 aa)
irlRDNA-binding heavy metal response regulator. (226 aa)
fnrACRP/FNR family transcriptional regulator, dissimilatory nitrate respiration regulator; cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinase. (239 aa)
AGA32973.1Metal-dependent phosphohydrolase, HD subdomain protein. (193 aa)
fixJTwo-component nitrogen fixation transcriptional regulator FixJ. (212 aa)
AGA33035.1Periplasmic sensor signal transduction histidine kinase. (522 aa)
yegEDiguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s). (914 aa)
yddUResponse regulator receiver modulated diguanylate cyclase/phosphodiesterase. (803 aa)
yciKShort chain dehydrogenase. (251 aa)
AGA33183.1Multi-sensor signal transduction histidine kinase. (524 aa)
AGA33184.1Putative transcriptional regulatory protein. (218 aa)
AGA33213.1Diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s). (359 aa)
AGA33255.1Type IV pilus biogenesis protein PilZ. (115 aa)
AGA33418.1Nitrate/nitrite sensor protein. (647 aa)
AGA33419.1Nitrate/nitrite response regulator protein. (209 aa)
AGA33532.1CRP/FNR family transcriptional regulator, dissimilatory nitrate respiration regulator; cAMP-binding protein - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinase. (188 aa)
glnD[Protein-PII] uridylyltransferase; Modifies, by uridylylation and deuridylylation, the PII regulatory proteins (GlnB and homologs), in response to the nitrogen status of the cell that GlnD senses through the glutamine level. Under low glutamine levels, catalyzes the conversion of the PII proteins and UTP to PII-UMP and PPi, while under higher glutamine levels, GlnD hydrolyzes PII-UMP to PII and UMP (deuridylylation). Thus, controls uridylylation state and activity of the PII proteins, and plays an important role in the regulation of nitrogen assimilation and metabolism. (886 aa)
AGA33668.1Diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s). (1005 aa)
crp-2CRP/FNR family transcriptional regulator, cyclic AMP receptor protein; cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinase. (204 aa)
AGA33740.1Diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s). (1157 aa)
anrTranscriptional regulator, Crp/Fnr family. (243 aa)
AGA33830.1Hypothetical protein. (122 aa)
luxQPAS protein. (1324 aa)
AGA34060.1Response regulator. (378 aa)
AGA34109.1Diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s). (734 aa)
AGA34128.1Nitrogen regulatory protein P-II; Belongs to the P(II) protein family. (112 aa)
degUDNA-binding response regulator, LuxR family. (263 aa)
nodVSensory box histidine kinase. (937 aa)
AGA34135.1Response regulator receiver. (148 aa)
AGA34136.1GGDEF family protein. (603 aa)
AGA34137.1TadE-like protein. (148 aa)
AGA34138.1Putative transmembrane protein. (590 aa)
AGA34139.1Hypothetical protein. (116 aa)
AGA34140.1Putative pilus assembly protein. (282 aa)
AGA34141.1Type II secretion system protein. (310 aa)
AGA34142.1Flp pilus assembly protein TadB. (295 aa)
gspEType II/IV secretion system ATP hydrolase TadA/VirB11/CpaF, TadA subfamily. (424 aa)
AGA34144.1Flp pilus assembly protein CpaE. (406 aa)
hofQType II/IV secretion system secretin RcpA/CpaC, associated with Flp pilus assembly; Belongs to the bacterial secretin family. (429 aa)
AGA34146.1Flp pilus assembly protein CpaB. (325 aa)
AGA34147.1Flp/Fap pilin component. (60 aa)
AGA34148.1Prepilin peptidase; typeII/IV secretion. (167 aa)
pilSTwo-component sensor PilS. (545 aa)
AGA34159.1Fis family two component sigma-54 specific transcriptional regulator - like protein. (457 aa)
rpoNRNA polymerase sigma-54 factor RpoN; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. (472 aa)
narQNitrate/nitrite sensor protein. (542 aa)
AGA34352.1Nitrate/nitrite response regulator protein. (219 aa)
dnaQDNA polymerase III epsilon subunit; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'- 5' exonuclease. (236 aa)
rnhARibonuclease HI; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids. (155 aa)
AGA34364.1Hypothetical protein. (240 aa)
AGA34363.1Membrane-bound lytic murein transglycosylase D precursor. (525 aa)
AGA34365.1CigR (Putative inner membrane protein). (93 aa)
AGA34391.1Sensor histidine kinase - like protein. (996 aa)
zraRSigma54 specific transcriptional regulator, Fis family ZraR - like protein. (318 aa)
AGA34529.1Sigma54 specific transcriptional regulator, Fis family - like protein. (448 aa)
AGA34587.1Sigma54 specific transcriptional regulator with PAS sensor, Fis family. (464 aa)
AGA34599.1Sensory box protein. (150 aa)
cmpRTranscriptional regulator; Belongs to the LysR transcriptional regulatory family. (347 aa)
AGA34616.1Putative nitrogen regulatory protein P-II. (106 aa)
AGA34617.1Putative sodium-dependent bicarbonate transporter. (335 aa)
AGA34633.1Diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s). (1086 aa)
cbbYCHAD-superfamily hydrolase, subfamily IA, variant 3. (258 aa)
dksA-3C4-type zinc finger protein, DksA/TraR family; Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters. Also required for regulation of fis expression. (150 aa)
AGA34729.1Hypothetical protein. (56 aa)
atoS-2Two-component sensor CbrA: intrcellular carbon:nitrogen balance. (976 aa)
AGA34731.1Two component, sigma54 specific, transcriptional regulator, Fis family - like protein. (437 aa)
AGA34732.1Putative signal-transduction protein containing cAMP-binding and CBS domains. (624 aa)
AGA34733.1FIG152265: Sodium:solute symporter associated protein. (86 aa)
yjcGAcetate permease ActP (cation/acetate symporter); Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family. (591 aa)
AGA34735.1Putative signal-transduction protein containing cAMP-binding and CBS domains. (618 aa)
AGA34736.1DNA polymerase III epsilon subunit. (235 aa)
hcaTNucleoside:H+ symporter:Major facilitator superfamily. (395 aa)
yfgF-2Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s). (688 aa)
AGA34823.1Diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s). (781 aa)
AGA34979.1Beta-lactamase related protein. (316 aa)
flbDSigma-54 dependent transcriptional regulator. (496 aa)
AGA35160.1Hypothetical protein. (101 aa)
AGA35201.1Putative PEP-CTERM/exosortase system-associated acyltransferase. (253 aa)
AGA35202.1Hypothetical protein. (166 aa)
AGA35203.1Hypothetical protein. (403 aa)
ykoWDiguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s). (984 aa)
fucARibulose-5-phosphate 4-epimerase and related epimerase and aldolase. (218 aa)
yafJGlutamine amidotransferase, class-II. (287 aa)
AGA35322.1Diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s). (252 aa)
trmLtRNA (cytosine34-2'-O-)-methyltransferase; Methylates the ribose at the nucleotide 34 wobble position in the two leucyl isoacceptors tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). Catalyzes the methyl transfer from S-adenosyl-L-methionine to the 2'-OH of the wobble nucleotide. (154 aa)
glnGNitrogen regulation protein NR(I); Member of the two-component regulatory system NtrB/NtrC, which controls expression of the nitrogen-regulated (ntr) genes in response to nitrogen limitation. Phosphorylated NtrC binds directly to DNA and stimulates the formation of open promoter-sigma54-RNA polymerase complexes. (477 aa)
ntrBNitrogen regulation protein NR(II). (360 aa)
AGA35365.1Hypothetical protein. (96 aa)
AGA35366.1Hypothetical protein. (120 aa)
ygdH-2DNA processing protein A; Belongs to the LOG family. (250 aa)
AGA35471.1Two component transcriptional regulator, LuxR family. (212 aa)
Your Current Organism:
Thioalkalivibrio nitratireducens
NCBI taxonomy Id: 1255043
Other names: T. nitratireducens DSM 14787, Thioalkalivibrio nitratireducens ALEN 2, Thioalkalivibrio nitratireducens DSM 14787, Thioalkalivibrio nitratireducens str. DSM 14787, Thioalkalivibrio nitratireducens strain DSM 14787
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