Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| AHM58529.1 | AHM58989.1 | D770_01275 | D770_03610 | RpoD subfamily RNA polymerase sigma-70 subunit; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | Primary replicative DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity. Belongs to the helicase family. DnaB subfamily. | 0.553 |
| AHM58529.1 | AHM59481.1 | D770_01275 | D770_06090 | RpoD subfamily RNA polymerase sigma-70 subunit; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | DNA polymerase III subunit beta; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | 0.630 |
| AHM58529.1 | AHM63410.1 | D770_01275 | D770_25835 | RpoD subfamily RNA polymerase sigma-70 subunit; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | COG2176 DNA polymerase III, alpha subunit (gram-positive type). | 0.489 |
| AHM58529.1 | dnaG | D770_01275 | D770_25090 | RpoD subfamily RNA polymerase sigma-70 subunit; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. | 0.856 |
| AHM58529.1 | recG | D770_01275 | D770_16395 | RpoD subfamily RNA polymerase sigma-70 subunit; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | ATP-dependent DNA helicase RecG; Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y- DNA); Belongs to the helicase family. RecG subfamily. | 0.486 |
| AHM58910.1 | AHM58991.1 | D770_03215 | D770_03620 | COG1466 DNA polymerase III, delta subunit. | COG0847 DNA polymerase III, epsilon subunit and related 3'-5' exonucleases. | 0.945 |
| AHM58910.1 | AHM59367.1 | D770_03215 | D770_05500 | COG1466 DNA polymerase III, delta subunit. | COG0847 DNA polymerase III, epsilon subunit and related 3'-5' exonucleases. | 0.943 |
| AHM58910.1 | AHM59481.1 | D770_03215 | D770_06090 | COG1466 DNA polymerase III, delta subunit. | DNA polymerase III subunit beta; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | 0.991 |
| AHM58910.1 | AHM59991.1 | D770_03215 | D770_08640 | COG1466 DNA polymerase III, delta subunit. | Exonuclease; COG0847 DNA polymerase III, epsilon subunit and related 3'-5' exonucleases. | 0.946 |
| AHM58910.1 | AHM60073.1 | D770_03215 | D770_09080 | COG1466 DNA polymerase III, delta subunit. | COG0847 DNA polymerase III, epsilon subunit and related 3'-5' exonucleases. | 0.930 |
| AHM58910.1 | AHM61836.1 | D770_03215 | D770_17920 | COG1466 DNA polymerase III, delta subunit. | COG2812 DNA polymerase III, gamma/tau subunits. | 0.988 |
| AHM58910.1 | AHM62043.1 | D770_03215 | D770_18960 | COG1466 DNA polymerase III, delta subunit. | DNA polymerase III subunits gamma and tau. | 0.776 |
| AHM58910.1 | AHM63410.1 | D770_03215 | D770_25835 | COG1466 DNA polymerase III, delta subunit. | COG2176 DNA polymerase III, alpha subunit (gram-positive type). | 0.990 |
| AHM58910.1 | dnaX | D770_03215 | D770_18965 | COG1466 DNA polymerase III, delta subunit. | DNA polymerase III subunits tau/gamma; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity. | 0.979 |
| AHM58910.1 | recF | D770_03215 | D770_17725 | COG1466 DNA polymerase III, delta subunit. | recF protein; The RecF protein is involved in DNA metabolism; it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP; Belongs to the RecF family. | 0.401 |
| AHM58989.1 | AHM58529.1 | D770_03610 | D770_01275 | Primary replicative DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity. Belongs to the helicase family. DnaB subfamily. | RpoD subfamily RNA polymerase sigma-70 subunit; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | 0.553 |
| AHM58989.1 | AHM58991.1 | D770_03610 | D770_03620 | Primary replicative DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity. Belongs to the helicase family. DnaB subfamily. | COG0847 DNA polymerase III, epsilon subunit and related 3'-5' exonucleases. | 0.574 |
| AHM58989.1 | AHM59481.1 | D770_03610 | D770_06090 | Primary replicative DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity. Belongs to the helicase family. DnaB subfamily. | DNA polymerase III subunit beta; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | 0.487 |
| AHM58989.1 | AHM61530.1 | D770_03610 | D770_16380 | Primary replicative DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity. Belongs to the helicase family. DnaB subfamily. | Single-stranded DNA binding protein; Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism. | 0.670 |
| AHM58989.1 | AHM61836.1 | D770_03610 | D770_17920 | Primary replicative DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity. Belongs to the helicase family. DnaB subfamily. | COG2812 DNA polymerase III, gamma/tau subunits. | 0.597 |
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