Your Input: | |
| | rpmI | COG0291 Ribosomal protein L35; Belongs to the bacterial ribosomal protein bL35 family. (64 aa) |
| | recO | DNA repair protein RecO; Involved in DNA repair and RecF pathway recombination. (230 aa) |
| | AHM61664.1 | Hypothetical protein. (130 aa) |
| | AHM61673.1 | Fatty acid hydroxylase; COG3000 Sterol desaturase. (153 aa) |
| | AHM61719.1 | COG2154 Pterin-4a-carbinolamine dehydratase. (77 aa) |
| | rpsU | COG0828 Ribosomal protein S21; Belongs to the bacterial ribosomal protein bS21 family. (66 aa) |
| | rpsU-2 | COG0828 Ribosomal protein S21; Belongs to the bacterial ribosomal protein bS21 family. (64 aa) |
| | AHM61729.1 | Sigma 54 modulation protein/ribosomal protein S30ea; COG1544 Ribosome-associated protein Y (PSrp-1). (102 aa) |
| | pdhA | Pyruvate dehydrogenase E1 component subunit alpha; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). (346 aa) |
| | rpmE2 | COG0254 Ribosomal protein L31. (80 aa) |
| | AHM61840.1 | COG1397 ADP-ribosylglycohydrolase. (257 aa) |
| | AHM61962.1 | COG1071 Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit. (658 aa) |
| | rpsT | 30S ribosomal protein S20; Binds directly to 16S ribosomal RNA. (83 aa) |
| | AHM62014.1 | Hypothetical protein. (486 aa) |
| | rplM | 50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. (137 aa) |
| | rpsI | COG0103 Ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family. (128 aa) |
| | rpsB | COG0052 Ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family. (258 aa) |
| | AHM62141.1 | MOSC domain-containing protein; COG3217 Uncharacterized Fe-S protein. (286 aa) |
| | AHM62343.1 | COG1484 DNA replication protein. (239 aa) |
| | AHM62450.1 | COG0720 6-pyruvoyl-tetrahydropterin synthase. (140 aa) |
| | AHM62465.1 | COG0514 Superfamily II DNA helicase. (640 aa) |
| | AHM62474.1 | Type 12 methyltransferase; COG0500 SAM-dependent methyltransferases. (365 aa) |
| | AHM62492.1 | COG0720 6-pyruvoyl-tetrahydropterin synthase. (178 aa) |
| | rpmH | COG0230 Ribosomal protein L34; Belongs to the bacterial ribosomal protein bL34 family. (52 aa) |
| | AHM62765.1 | Hypothetical protein. (86 aa) |
| | AHM62818.1 | COG1715 Restriction endonuclease. (291 aa) |
| | selO | Hypothetical protein; Catalyzes the transfer of adenosine 5'-monophosphate (AMP) to Ser, Thr or Tyr residues of target proteins (AMPylation). Belongs to the SELO family. (518 aa) |
| | AHM62927.1 | COG3236 Uncharacterized protein conserved in bacteria. (182 aa) |
| | AHM63100.1 | Hypothetical protein. (1144 aa) |
| | AHM63169.1 | ADP-ribosylation/crystallin J1. (524 aa) |
| | AHM63172.1 | ADP-ribosylation/Crystallin J1. (526 aa) |
| | AHM63184.1 | COG1484 DNA replication protein. (239 aa) |
| | AHM63197.1 | tRNA(His)-5'-guanylyltransferase. (62 aa) |
| | AHM63202.1 | Hypothetical protein; COG1397 ADP-ribosylglycohydrolase. (313 aa) |
| | AHM63221.1 | COG0514 Superfamily II DNA helicase. (1608 aa) |
| | priA | Primosomal protein N; Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA; Belongs to the helicase family. PriA subfamily. (840 aa) |
| | dnaG | DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. (638 aa) |
| | rplI | 50S ribosomal protein L9p; Binds to the 23S rRNA. (147 aa) |
| | rpsR | 30S ribosomal protein S18; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit; Belongs to the bacterial ribosomal protein bS18 family. (83 aa) |
| | rpsF | 30S ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA. (147 aa) |
| | ispE | 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol. (275 aa) |
| | AHM63475.1 | Cmp/dcmp deaminase zinc-binding protein; COG2131 Deoxycytidylate deaminase. (160 aa) |
| | gyrB | DNA gyrase subunit B; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner. (652 aa) |
| | AHM63551.1 | RNA-metabolising metallo-beta-lactamase; COG1236 Predicted exonuclease of the beta-lactamase fold involved in RNA processing. (465 aa) |
| | AHM63554.1 | COG2940 Proteins containing SET domain. (207 aa) |
| | AHM63586.1 | COG0539 Ribosomal protein S1. (694 aa) |
| | AHM61528.1 | COG0776 Bacterial nucleoid DNA-binding protein; Belongs to the bacterial histone-like protein family. (110 aa) |
| | AHM61389.1 | Hypothetical protein; COG3298 Predicted 3'-5' exonuclease related to the exonuclease domain of PolB. (243 aa) |
| | rpmA | COG0211 Ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family. (86 aa) |
| | rplU | 50S ribosomal protein L21p; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. (103 aa) |
| | AHM61341.1 | Beta-carotene 15,15'-monooxygenase; COG3670 Lignostilbene-alpha,beta-dioxygenase and related enzymes. (418 aa) |
| | AHM61180.1 | Dihydrodipicolinate reductase; COG0059 Ketol-acid reductoisomerase. (274 aa) |
| | AHM61160.1 | Coenzyme F420-dependent NADP oxidoreductase; COG0059 Ketol-acid reductoisomerase. (274 aa) |
| | AHM61158.1 | RuBisCo-like protein; COG1850 Ribulose 1,5-bisphosphate carboxylase, large subunit; Belongs to the RuBisCO large chain family. (415 aa) |
| | AHM61096.1 | Acetyl-CoA carboxylase, biotin carboxylase; COG3533 Uncharacterized protein conserved in bacteria. (802 aa) |
| | AHM60976.1 | COG0514 Superfamily II DNA helicase. (686 aa) |
| | AHM60919.1 | COG1484 DNA replication protein. (239 aa) |
| | AHM60801.1 | COG3823 Glutamine cyclotransferase. (262 aa) |
| | AHM60762.1 | ADP-ribosylglycohydrolase. (523 aa) |
| | murQ | N-acetylmuramic acid-6-phosphate etherase; Specifically catalyzes the cleavage of the D-lactyl ether substituent of MurNAc 6-phosphate, producing GlcNAc 6-phosphate and D- lactate. (272 aa) |
| | rpmG | COG0267 Ribosomal protein L33; Belongs to the bacterial ribosomal protein bL33 family. (60 aa) |
| | rpmB | COG0227 Ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family. (78 aa) |
| | AHM60510.1 | COG3569 Topoisomerase IB. (374 aa) |
| | rpsP | COG0228 Ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family. (182 aa) |
| | rimM | 16S rRNA-processing protein; An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes; Belongs to the RimM family. (182 aa) |
| | rplS | 50S ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site. (117 aa) |
| | recR | Recombination protein RecR; May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO. (207 aa) |
| | AHM60399.1 | ATP-dependent clp protease adaptor protein clps; Belongs to the ClpS family. (93 aa) |
| | AHM60360.1 | HRDC domain-containing protein; COG0507 ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member. (833 aa) |
| | kptA | Phosphotransferase KptA/Tpt1; Removes the 2'-phosphate from RNA via an intermediate in which the phosphate is ADP-ribosylated by NAD followed by a presumed transesterification to release the RNA and generate ADP-ribose 1''-2''- cyclic phosphate (APPR>P). May function as an ADP-ribosylase. (182 aa) |
| | AHM60286.1 | DNA topoisomerase III; COG0550 Topoisomerase IA. (720 aa) |
| | AHM60269.1 | Hypothetical protein. (351 aa) |
| | AHM60221.1 | COG2256 ATPase related to the helicase subunit of the Holliday junction resolvase. (427 aa) |
| | nadD | Nicotinate (nicotinamide) nucleotide adenylyltransferase; Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD). (190 aa) |
| | rplK | 50S ribosomal protein L11; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. (148 aa) |
| | rplA | 50S ribosomal protein L1; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release. (232 aa) |
| | rplJ | 50S ribosomal protein L10; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family. (178 aa) |
| | rplL | 50S ribosomal protein L7/L12; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation; Belongs to the bacterial ribosomal protein bL12 family. (125 aa) |
| | rpsL | 30S ribosomal protein S12; Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit. (126 aa) |
| | rpsG | 30S ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family. (155 aa) |
| | rpsJ | 30S ribosomal protein S10p; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family. (101 aa) |
| | rplC | 50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. (210 aa) |
| | rplD | 50S ribosomal protein L4; Forms part of the polypeptide exit tunnel. (211 aa) |
| | rplW | 50S ribosomal protein L23; One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome; Belongs to the universal ribosomal protein uL23 family. (95 aa) |
| | rplB | 50S ribosomal protein L2; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family. (274 aa) |
| | rpsS | Ribosomal protein S19; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA. (92 aa) |
| | rplV | 50S ribosomal protein L22; The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome. (126 aa) |
| | rpsC | 30S ribosomal protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family. (247 aa) |
| | rplP | 50S ribosomal protein L16; Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs; Belongs to the universal ribosomal protein uL16 family. (139 aa) |
| | rpmC | COG0255 Ribosomal protein L29; Belongs to the universal ribosomal protein uL29 family. (64 aa) |
| | rpsQ | 30S ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA. (85 aa) |
| | rplN | 50S ribosomal protein L14; Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome; Belongs to the universal ribosomal protein uL14 family. (122 aa) |
| | rplX | 50S ribosomal protein L24; One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit. (117 aa) |
| | rplE | 50S ribosomal protein L5; This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits; this bridge is implicated in subunit movement. Contacts the P site tRNA; the 5S rRNA and some of its associated proteins might help stabilize positioning of ribosome-bound tRNAs. (184 aa) |
| | rpsN | 30S ribosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site; Belongs to the universal ribosomal protein uS14 family. (89 aa) |
| | rpsH | 30S ribosomal protein S8; One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; Belongs to the universal ribosomal protein uS8 family. (131 aa) |
| | rplF | 50S ribosomal protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family. (184 aa) |
| | rplR | 50S ribosomal protein L18; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. (116 aa) |
| | rpsE | 30S ribosomal protein S5; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family. (172 aa) |
| | rpmD | COG1841 Ribosomal protein L30/L7E. (59 aa) |
| | rplO | 50S ribosomal protein L15; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family. (148 aa) |
| | rpmJ | COG0257 Ribosomal protein L36; Belongs to the bacterial ribosomal protein bL36 family. (38 aa) |
| | rpsM | 30S ribosomal protein S13; Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits; these bridges are implicated in subunit movement. Contacts the tRNAs in the A and P-sites. Belongs to the universal ribosomal protein uS13 family. (125 aa) |
| | rpsK | 30S ribosomal protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family. (130 aa) |
| | rpsD | 30S ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. (167 aa) |
| | AHM60169.1 | COG0203 Ribosomal protein L17; Belongs to the bacterial ribosomal protein bL17 family. (150 aa) |
| | AHM60114.1 | Hypothetical protein; Belongs to the SOS response-associated peptidase family. (232 aa) |
| | AHM60103.1 | ATP-dependent helicase HrpB; COG1643 HrpA-like helicases. (831 aa) |
| | AHM59968.1 | Transketolase central region; COG1071 Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit. (700 aa) |
| | hemA | glutamyl-tRNA reductase; Catalyzes the NADPH-dependent reduction of glutamyl-tRNA(Glu) to glutamate 1-semialdehyde (GSA). (425 aa) |
| | AHM59933.1 | COG0514 Superfamily II DNA helicase. (727 aa) |
| | AHM59826.1 | COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase. (355 aa) |
| | mutS2 | Smr protein/MutS2; Endonuclease that is involved in the suppression of homologous recombination and may therefore have a key role in the control of bacterial genetic diversity; Belongs to the DNA mismatch repair MutS family. MutS2 subfamily. (799 aa) |
| | lpxD | UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3- hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell. Belongs to the transferase hexapeptide repeat family. LpxD subfamily. (365 aa) |
| | AHM59521.1 | COG1078 HD superfamily phosphohydrolases. (415 aa) |
| | AHM59461.1 | Lipid-binding START domain-containing protein. (200 aa) |
| | rpmF | COG0333 Ribosomal protein L32; Belongs to the bacterial ribosomal protein bL32 family. (63 aa) |
| | AHM59382.1 | Smr domain-containing protein; COG1193 Mismatch repair ATPase (MutS family). (322 aa) |
| | AHM59299.1 | COG1484 DNA replication protein. (239 aa) |
| | AHM59196.1 | 6-phosphogluconate dehydrogenase; COG3265 Gluconate kinase; Belongs to the 6-phosphogluconate dehydrogenase family. (631 aa) |
| | AHM59173.1 | Riboflavin kinase/FMN adenylyltransferase; COG0196 FAD synthase; Belongs to the ribF family. (310 aa) |
| | AHM59161.1 | RNA procession exonuclease; COG1236 Predicted exonuclease of the beta-lactamase fold involved in RNA processing. (346 aa) |
| | AHM59158.1 | COG0720 6-pyruvoyl-tetrahydropterin synthase. (135 aa) |
| | AHM59050.1 | COG2102 Predicted ATPases of PP-loop superfamily. (251 aa) |
| | miaA | tRNA delta(2)-isopentenylpyrophosphate transferase; Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A); Belongs to the IPP transferase family. (305 aa) |
| | AHM59009.1 | UPF0133 protein ybaB; Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection. (110 aa) |
| | AHM58989.1 | Primary replicative DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity. Belongs to the helicase family. DnaB subfamily. (508 aa) |
| | AHM58919.1 | DNA topoisomerase IV subunit B; COG0187 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit. (648 aa) |
| | AHM58917.1 | COG0188 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit. (840 aa) |
| | gyrA | DNA gyrase subunit a; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner. (848 aa) |
| | AHM58801.1 | NADP oxidoreductase coenzyme F420-dependent; COG2085 Predicted dinucleotide-binding enzymes. (248 aa) |
| | AHM58800.1 | Coenzyme F420-dependent NADP oxidoreductase; COG2085 Predicted dinucleotide-binding enzymes. (248 aa) |
| | AHM58794.1 | Putative reductase; COG2085 Predicted dinucleotide-binding enzymes. (215 aa) |
| | AHM58581.1 | COG2094 3-methyladenine DNA glycosylase; Belongs to the DNA glycosylase MPG family. (211 aa) |
| | rpsO | 30S ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome. (91 aa) |
| | rplT | 50S ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit. (114 aa) |
| | AHM61617.1 | Hypothetical protein. (2127 aa) |
| | rplY | 50S ribosomal protein L25/general stress protein Ctc; This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance. Belongs to the bacterial ribosomal protein bL25 family. CTC subfamily. (187 aa) |
