(9 nodes) Galactose mutarotase-like domain superfamily network (Flammeovirgaceae bacterium 311)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AHM61610.1	COG3250 Beta-galactosidase/beta-glucuronidase. (63 aa)
	AHM61102.1	Aldose 1-epimerase; Converts alpha-aldose to the beta-anomer. (409 aa)
	AHM59076.1	COG1501 Alpha-glucosidases, family 31 of glycosyl hydrolases; Belongs to the glycosyl hydrolase 31 family. (947 aa)
	AHM61710.1	Hypothetical protein; COG2017 Galactose mutarotase and related enzymes. (291 aa)
	AHM62239.1	Hypothetical protein. (352 aa)
	AHM58931.1	COG1501 Alpha-glucosidases, family 31 of glycosyl hydrolases; Belongs to the glycosyl hydrolase 31 family. (820 aa)
	AHM58369.1	COG1554 Trehalose and maltose hydrolases (possible phosphorylases). (815 aa)
	AHM62991.1	Aldose 1-epimerase; Converts alpha-aldose to the beta-anomer. (396 aa)
	AHM63316.1	COG1501 Alpha-glucosidases, family 31 of glycosyl hydrolases; Belongs to the glycosyl hydrolase 31 family. (822 aa)

Your Current Organism:

Flammeovirgaceae bacterium 311

NCBI taxonomy Id: 1257021
Other names: F. bacterium 311

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AHM58931.1	AHM63316.1	D770_03320	D770_25355	COG1501 Alpha-glucosidases, family 31 of glycosyl hydrolases; Belongs to the glycosyl hydrolase 31 family.	COG1501 Alpha-glucosidases, family 31 of glycosyl hydrolases; Belongs to the glycosyl hydrolase 31 family.	0.913
AHM61102.1	AHM62991.1	D770_14240	D770_23730	Aldose 1-epimerase; Converts alpha-aldose to the beta-anomer.	Aldose 1-epimerase; Converts alpha-aldose to the beta-anomer.	0.902
AHM62991.1	AHM61102.1	D770_23730	D770_14240	Aldose 1-epimerase; Converts alpha-aldose to the beta-anomer.	Aldose 1-epimerase; Converts alpha-aldose to the beta-anomer.	0.902
AHM63316.1	AHM58931.1	D770_25355	D770_03320	COG1501 Alpha-glucosidases, family 31 of glycosyl hydrolases; Belongs to the glycosyl hydrolase 31 family.	COG1501 Alpha-glucosidases, family 31 of glycosyl hydrolases; Belongs to the glycosyl hydrolase 31 family.	0.913