STRINGSTRING
ACA1_057390 ACA1_057390 ACA1_212840 ACA1_212840 ACA1_334430 ACA1_334430 ACA1_363770 ACA1_363770 ACA1_295440 ACA1_295440 ACA1_309660 ACA1_309660 ACA1_289720 ACA1_289720 ACA1_061520 ACA1_061520 ACA1_369110 ACA1_369110 ACA1_159130 ACA1_159130 ACA1_002780 ACA1_002780 ACA1_134990 ACA1_134990
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
ACA1_057390LSM domain containing protein. (204 aa)
ACA1_212840CROP protein. (410 aa)
ACA1_334430SNF, putative. (65 aa)
ACA1_363770TPR_REGION domain-containing protein. (640 aa)
ACA1_295440Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family. (125 aa)
ACA1_309660Uncharacterized protein. (632 aa)
ACA1_289720U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region. (220 aa)
ACA1_061520Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (90 aa)
ACA1_369110Small nuclear ribonucleoprotein G. (76 aa)
ACA1_159130Uncharacterized protein. (270 aa)
ACA1_002780RNA recognition motif domain containing protein. (288 aa)
ACA1_134990Small nuclear ribonucleoprotein Sm D3. (136 aa)
Your Current Organism:
Acanthamoeba castellanii
NCBI taxonomy Id: 1257118
Other names: A. castellanii str. Neff, Acanthamoeba castellanii Neff strain, Acanthamoeba castellanii str. Neff, Acanthamoeba castellanii strain Neff
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