STRINGSTRING
ACA1_050870 ACA1_050870 ACA1_390610 ACA1_390610 ACA1_038280 ACA1_038280 ACA1_093050 ACA1_093050 ACA1_101400 ACA1_101400 ACA1_134990 ACA1_134990 LSM8 LSM8 ACA1_295440 ACA1_295440 ACA1_116470 ACA1_116470 ACA1_376250 ACA1_376250 ACA1_283320 ACA1_283320 ACA1_072200 ACA1_072200 ACA1_361290 ACA1_361290 LSM3 LSM3 ACA1_116510 ACA1_116510 ACA1_296860 ACA1_296860 ACA1_062870 ACA1_062870 ACA1_041000 ACA1_041000 ACA1_369110 ACA1_369110 ACA1_061520 ACA1_061520 ACA1_042000 ACA1_042000 ACA1_177250 ACA1_177250 ACA1_223050 ACA1_223050
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
ACA1_050870RNA recognition motif domain containing protein. (128 aa)
ACA1_390610Splicing factor 3b subunit 5, putative. (73 aa)
ACA1_038280Splicing factor 3b subunit 3, putative. (1227 aa)
ACA1_093050Smu1 suppressor, putative. (495 aa)
ACA1_101400Splicing factor 3a subunit 2, putative. (229 aa)
ACA1_134990Small nuclear ribonucleoprotein Sm D3. (136 aa)
LSM8U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA. (94 aa)
ACA1_295440Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family. (125 aa)
ACA1_116470PRP38 premRNA processing factor. (418 aa)
ACA1_376250PHD finger protein. (110 aa)
ACA1_283320PSP, prolinerich, putative. (600 aa)
ACA1_072200RNA recognition motif domain containing protein. (355 aa)
ACA1_361290Zinc finger domain containing protein. (256 aa)
LSM3U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (103 aa)
ACA1_116510Fbox domain containing protein. (589 aa)
ACA1_296860Putative snoRNA binding domain containing protein. (490 aa)
ACA1_062870PremRNA splicing factor PRP38 family protein. (458 aa)
ACA1_041000RRM domain-containing protein. (57 aa)
ACA1_369110Small nuclear ribonucleoprotein G. (76 aa)
ACA1_061520Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (90 aa)
ACA1_042000SnRNP core protein SMX5d, putative. (113 aa)
ACA1_177250WD domain, G-beta repeat-containing protein. (231 aa)
ACA1_223050Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family. (127 aa)
Your Current Organism:
Acanthamoeba castellanii
NCBI taxonomy Id: 1257118
Other names: A. castellanii str. Neff, Acanthamoeba castellanii Neff strain, Acanthamoeba castellanii str. Neff, Acanthamoeba castellanii strain Neff
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