STRINGSTRING
LSM4 LSM4 ACA1_134990 ACA1_134990 LSM3 LSM3 ACA1_369110 ACA1_369110 ACA1_057390 ACA1_057390 ACA1_042000 ACA1_042000 ACA1_061520 ACA1_061520 ACA1_290670 ACA1_290670 LSM8 LSM8 ACA1_289760 ACA1_289760 ACA1_295440 ACA1_295440 ACA1_072540 ACA1_072540 LSM1 LSM1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
LSM4U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (131 aa)
ACA1_134990Small nuclear ribonucleoprotein Sm D3. (136 aa)
LSM3U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (103 aa)
ACA1_369110Small nuclear ribonucleoprotein G. (76 aa)
ACA1_057390LSM domain containing protein. (204 aa)
ACA1_042000SnRNP core protein SMX5d, putative. (113 aa)
ACA1_061520Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (90 aa)
ACA1_290670Sm domain-containing protein. (96 aa)
LSM8U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA. (94 aa)
ACA1_289760FFD and TFG box motifscontaining protein. (549 aa)
ACA1_295440Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family. (125 aa)
ACA1_072540Smlike protein LSm6, putative. (84 aa)
LSM1U6 snRNA-associated Sm-like protein LSm1; Probably involved with other LSm subunits in the general process of degradation of mRNAs. (135 aa)
Your Current Organism:
Acanthamoeba castellanii
NCBI taxonomy Id: 1257118
Other names: A. castellanii str. Neff, Acanthamoeba castellanii Neff strain, Acanthamoeba castellanii str. Neff, Acanthamoeba castellanii strain Neff
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