STRINGSTRING
ACA1_290670 ACA1_290670 ACA1_180170 ACA1_180170 ACA1_258700 ACA1_258700 ACA1_189300 ACA1_189300 ACA1_093410 ACA1_093410 ACA1_096660 ACA1_096660 LSM4 LSM4 ACA1_097800 ACA1_097800 ACA1_339940 ACA1_339940 ACA1_364250 ACA1_364250 ACA1_106780 ACA1_106780 ACA1_271270 ACA1_271270 ACA1_077820 ACA1_077820 ACA1_088590 ACA1_088590 ACA1_061690 ACA1_061690 ACA1_042000 ACA1_042000 ACA1_207360 ACA1_207360 ACA1_044770 ACA1_044770 ACA1_155420 ACA1_155420 ACA1_113910 ACA1_113910 ACA1_053270 ACA1_053270 ACA1_117210 ACA1_117210 ACA1_195230 ACA1_195230 ACA1_229620 ACA1_229620 ACA1_158500 ACA1_158500 LSM3 LSM3 ACA1_159550 ACA1_159550 ACA1_045960 ACA1_045960 ACA1_254420 ACA1_254420 ACA1_012330 ACA1_012330 ACA1_160040 ACA1_160040 ACA1_126570 ACA1_126570 ACA1_360300 ACA1_360300 LSM1 LSM1 ACA1_072190 ACA1_072190 ACA1_072540 ACA1_072540 ACA1_072170 ACA1_072170 ACA1_073070 ACA1_073070 ACA1_291020 ACA1_291020 ACA1_171650 ACA1_171650 ACA1_295350 ACA1_295350
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
ACA1_290670Sm domain-containing protein. (96 aa)
ACA1_180170RNA-binding domain-containing protein. (240 aa)
ACA1_258700Exosc8 protein. (278 aa)
ACA1_189300Uncharacterized protein. (239 aa)
ACA1_093410Helicase conserved Cterminal domain containing protein. (1048 aa)
ACA1_096660Helicase conserved Cterminal domain containing protein. (907 aa)
LSM4U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (131 aa)
ACA1_097800Ribonuclease II; Belongs to the RNR ribonuclease family. (964 aa)
ACA1_339940Tetratricopeptide repeat domain containing protein. (791 aa)
ACA1_3642503' exoribonuclease family, domain 1 domain containing protein. (524 aa)
ACA1_106780Exoribonuclease II. (406 aa)
ACA1_271270Atpdependent rna helicase ddx6, putative; Belongs to the DEAD box helicase family. (407 aa)
ACA1_077820Helicase conserved Cterminal domain containing protein. (185 aa)
ACA1_088590Scavenger mrna decapping enzyme (Dcps) protein. (540 aa)
ACA1_0616903' exoribonuclease family, domain 1 domain containing protein. (236 aa)
ACA1_042000SnRNP core protein SMX5d, putative. (113 aa)
ACA1_207360HBS1like, putative. (566 aa)
ACA1_044770EF-hand domain-containing protein. (709 aa)
ACA1_155420WD domain, Gbeta repeat-containing protein. (304 aa)
ACA1_113910Uncharacterized protein. (1345 aa)
ACA1_053270Hydrolase, NUDIX domain containing protein. (597 aa)
ACA1_117210Tr-type G domain-containing protein. (407 aa)
ACA1_195230DIS3-like exonuclease 2; 3'-5'-exoribonuclease that specifically recognizes RNAs polyuridylated at their 3' end and mediates their degradation. Component of an exosome-independent RNA degradation pathway that mediates degradation of cytoplasmic mRNAs that have been deadenylated and subsequently uridylated at their 3'. (1400 aa)
ACA1_229620Nucleotidyltransferase domain containing protein. (976 aa)
ACA1_158500Hydrolase nudix family protein. (388 aa)
LSM3U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (103 aa)
ACA1_159550Poly(A)-specific ribonuclease, putative. (272 aa)
ACA1_045960Uncharacterized protein. (355 aa)
ACA1_254420Dcp1 family decapping family protein. (510 aa)
ACA1_012330WD domain, G-beta repeat-containing protein. (1186 aa)
ACA1_160040Ribonuclease, putative. (546 aa)
ACA1_126570Elongation factor Tu GTP binding domain containing protein. (496 aa)
ACA1_3603003' exoribonuclease family, domain 1 domain containing protein. (274 aa)
LSM1U6 snRNA-associated Sm-like protein LSm1; Probably involved with other LSm subunits in the general process of degradation of mRNAs. (135 aa)
ACA1_072190Poly(A)-specific ribonuclease. (501 aa)
ACA1_072540Smlike protein LSm6, putative. (84 aa)
ACA1_072170Poly(A)specific ribonuclease subunit protein, putative. (1048 aa)
ACA1_073070Exosome component 3, putative. (233 aa)
ACA1_291020Exosome complex exonuclease rrp41, putative. (205 aa)
ACA1_171650Exosome component 7, putative. (263 aa)
ACA1_295350RNA binding domain containing protein. (631 aa)
Your Current Organism:
Acanthamoeba castellanii
NCBI taxonomy Id: 1257118
Other names: A. castellanii str. Neff, Acanthamoeba castellanii Neff strain, Acanthamoeba castellanii str. Neff, Acanthamoeba castellanii strain Neff
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