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| | gyrA_2 | DNA gyrase subunit A; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner. (850 aa) |
| | gyrB_2 | DNA gyrase subunit B; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner. (694 aa) |
| | recF | DNA replication and repair protein RecF; The RecF protein is involved in DNA metabolism; it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP; Belongs to the RecF family. (408 aa) |
| | rpmH | 50S ribosomal protein L34; Belongs to the bacterial ribosomal protein bL34 family. (45 aa) |
| | soj_2 | Sporulation initiation inhibitor protein Soj. (308 aa) |
| | spo0C | Chromosome-partitioning protein Spo0J; Belongs to the ParB family. (322 aa) |
| | KJQ52580.1 | Hypothetical protein. (724 aa) |
| | rpsF | 30S ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA. (125 aa) |
| | rpsR1 | 30S ribosomal protein S18 1; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit; Belongs to the bacterial ribosomal protein bS18 family. (84 aa) |
| | dnaB | Replicative DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity. Belongs to the helicase family. DnaB subfamily. (457 aa) |
| | msmE_7 | Multiple sugar-binding protein precursor. (451 aa) |
| | liaR_8 | Transcriptional regulatory protein LiaR. (938 aa) |
| | KJQ52698.1 | Putative trans-acting enoyl reductase. (380 aa) |
| | KJQ52700.1 | Putative HTH-type transcriptional regulator. (955 aa) |
| | KJQ52772.1 | Bacterial extracellular solute-binding protein. (457 aa) |
| | KJQ52781.1 | Formiminotransferase-cyclodeaminase. (206 aa) |
| | msmE_8 | Multiple sugar-binding protein precursor. (429 aa) |
| | msmE_9 | Multiple sugar-binding protein precursor. (441 aa) |
| | rpmB | 50S ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family. (78 aa) |
| | rpmG2 | 50S ribosomal protein L33 2; Belongs to the bacterial ribosomal protein bL33 family. (56 aa) |
| | hup | DNA-binding protein HU; Belongs to the bacterial histone-like protein family. (95 aa) |
| | rpsN | 30S ribosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site; Belongs to the universal ribosomal protein uS14 family. (101 aa) |
| | KJQ56079.1 | CHAT domain protein. (816 aa) |
| | recQ_1 | ATP-dependent DNA helicase RecQ. (708 aa) |
| | tmk_1 | Thymidylate kinase. (214 aa) |
| | rplT | 50S ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit. (128 aa) |
| | rpmI | 50S ribosomal protein L35; Belongs to the bacterial ribosomal protein bL35 family. (70 aa) |
| | cutC | Copper homeostasis protein CutC; Participates in the control of copper homeostasis. Belongs to the CutC family. (253 aa) |
| | sdh_1 | Serine 3-dehydrogenase. (259 aa) |
| | dapH_1 | 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase. (178 aa) |
| | cobB | NAD-dependent protein deacetylase. (279 aa) |
| | hrpB_1 | ATP-dependent RNA helicase HrpB. (824 aa) |
| | KJQ55761.1 | Hypothetical protein. (407 aa) |
| | KJQ55725.1 | Hypothetical protein. (996 aa) |
| | KJQ55625.1 | Glycerol-3-phosphate transporter periplasmic binding protein. (414 aa) |
| | dksA | RNA polymerase-binding transcription factor DksA. (117 aa) |
| | obg | GTPase Obg. (287 aa) |
| | KJQ55512.1 | Hypothetical protein. (291 aa) |
| | rpsT | 30S ribosomal protein S20; Binds directly to 16S ribosomal RNA. (86 aa) |
| | recO | DNA repair protein RecO; Involved in DNA repair and RecF pathway recombination. (247 aa) |
| | dnaG | DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. (619 aa) |
| | KJQ55432.1 | Phosphotransferase enzyme family protein. (245 aa) |
| | KJQ55468.1 | Archaeal ATPase. (389 aa) |
| | crtN | Dehydrosqualene desaturase. (533 aa) |
| | yedK | Putative SOS response-associated peptidase YedK. (208 aa) |
| | KJQ55317.1 | Hypothetical protein. (434 aa) |
| | topA | DNA topoisomerase 1; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...] (967 aa) |
| | KJQ55355.1 | Bacterial type II secretion system protein F domain protein. (300 aa) |
| | KJQ55356.1 | Putative conjugal transfer protein. (336 aa) |
| | KJQ55361.1 | Phosphodiesterase YaeI. (313 aa) |
| | recR | Recombination protein RecR; May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO. (197 aa) |
| | ulaF | L-ribulose-5-phosphate 4-epimerase UlaF. (239 aa) |
| | KJQ55151.1 | Maltose ABC transporter periplasmic protein. (445 aa) |
| | KJQ55200.1 | Hypothetical protein. (514 aa) |
| | rplL_1 | 50S ribosomal protein L7/L12. (186 aa) |
| | KJQ55235.1 | HhH-GPD superfamily base excision DNA repair protein. (206 aa) |
| | KJQ55009.1 | Putative thiazole biosynthetic enzyme. (483 aa) |
| | rpsI | 30S ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family. (161 aa) |
| | rplM | 50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. (148 aa) |
| | recN | DNA repair protein RecN; May be involved in recombinational repair of damaged DNA. (557 aa) |
| | soj_1 | Sporulation initiation inhibitor protein Soj. (296 aa) |
| | parA | Chromosome partitioning protein ParA. (270 aa) |
| | spk1 | Serine/threonine-protein kinase PK-1. (643 aa) |
| | KJQ54922.1 | 30S ribosomal protein S1 homolog. (484 aa) |
| | KJQ54933.1 | Hypothetical protein. (112 aa) |
| | rplU | 50S ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. (102 aa) |
| | rpmE2 | 50S ribosomal protein L31 type B. (86 aa) |
| | pdxS | Pyridoxal biosynthesis lyase PdxS; Catalyzes the formation of pyridoxal 5'-phosphate from ribose 5-phosphate (RBP), glyceraldehyde 3-phosphate (G3P) and ammonia. The ammonia is provided by the PdxT subunit. Can also use ribulose 5- phosphate and dihydroxyacetone phosphate as substrates, resulting from enzyme-catalyzed isomerization of RBP and G3P, respectively. Belongs to the PdxS/SNZ family. (297 aa) |
| | KJQ54744.1 | Hypothetical protein. (450 aa) |
| | rarA | Replication-associated recombination protein A. (457 aa) |
| | priA_2 | Primosomal protein N; Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA; Belongs to the helicase family. PriA subfamily. (652 aa) |
| | yesO_1 | Putative ABC transporter substrate-binding protein YesO. (448 aa) |
| | KJQ54517.1 | Hypothetical protein. (155 aa) |
| | rplY | 50S ribosomal protein L25; This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance. Belongs to the bacterial ribosomal protein bL25 family. CTC subfamily. (209 aa) |
| | KJQ54590.1 | Putative conjugal transfer protein. (397 aa) |
| | liaR_3 | Transcriptional regulatory protein LiaR. (147 aa) |
| | KJQ54261.1 | Hypothetical protein. (319 aa) |
| | KJQ54265.1 | Ski2-like helicase. (849 aa) |
| | KJQ54353.1 | Bacterial extracellular solute-binding protein. (360 aa) |
| | yesO_3 | Putative ABC transporter substrate-binding protein YesO. (431 aa) |
| | kynU_1 | Kynureninase; Catalyzes the cleavage of L-kynurenine (L-Kyn) and L-3- hydroxykynurenine (L-3OHKyn) into anthranilic acid (AA) and 3- hydroxyanthranilic acid (3-OHAA), respectively. (421 aa) |
| | legI | N,N'-diacetyllegionaminic acid synthase. (290 aa) |
| | rpsG | 30S ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family. (157 aa) |
| | rpsJ | 30S ribosomal protein S10; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family. (163 aa) |
| | rplC | 50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. (219 aa) |
| | rplW | 50S ribosomal protein L23; One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome; Belongs to the universal ribosomal protein uL23 family. (107 aa) |
| | rplB | 50S ribosomal protein L2; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family. (279 aa) |
| | rpsC | 30S ribosomal protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family. (251 aa) |
| | rpmC | 50S ribosomal protein L29; Belongs to the universal ribosomal protein uL29 family. (105 aa) |
| | rpsQ | 30S ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA. (110 aa) |
| | rplN | 50S ribosomal protein L14; Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome; Belongs to the universal ribosomal protein uL14 family. (122 aa) |
| | rplX | 50S ribosomal protein L24; One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit. (119 aa) |
| | rplE | 50S ribosomal protein L5; This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits; this bridge is implicated in subunit movement. Contacts the P site tRNA; the 5S rRNA and some of its associated proteins might help stabilize positioning of ribosome-bound tRNAs. (196 aa) |
| | rpsH | 30S ribosomal protein S8; One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; Belongs to the universal ribosomal protein uS8 family. (132 aa) |
| | rplR | 50S ribosomal protein L18; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. (119 aa) |
| | rpsE | 30S ribosomal protein S5; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family. (238 aa) |
| | rpmD | 50S ribosomal protein L30. (61 aa) |
| | rplO | 50S ribosomal protein L15; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family. (222 aa) |
| | rpmJ | 50S ribosomal protein L36; Belongs to the bacterial ribosomal protein bL36 family. (38 aa) |
| | rpsK | 30S ribosomal protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family. (132 aa) |
| | rplQ | 50S ribosomal protein L17. (188 aa) |
| | KJQ54098.1 | Hypothetical protein. (144 aa) |
| | rplJ | 50S ribosomal protein L10; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family. (162 aa) |
| | rplL_2 | 50S ribosomal protein L7/L12; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation; Belongs to the bacterial ribosomal protein bL12 family. (125 aa) |
| | msmE_3 | Multiple sugar-binding protein precursor. (439 aa) |
| | ccsA | Cytochrome c biogenesis protein CcsA. (325 aa) |
| | KJQ53775.1 | Hypothetical protein. (58 aa) |
| | ykgO | 50S ribosomal protein L36 2; Belongs to the bacterial ribosomal protein bL36 family. (40 aa) |
| | lpxD | UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase. (200 aa) |
| | yvyD | Putative sigma-54 modulation protein; Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase; 100S ribosomes are translationally inactive and sometimes present during exponential growth. (218 aa) |
| | recQ_2 | ATP-dependent DNA helicase RecQ. (689 aa) |
| | KJQ53337.1 | Hypothetical protein. (260 aa) |
| | rlp2 | Ribulose bisphosphate carboxylase-like protein 2; Belongs to the RuBisCO large chain family. (418 aa) |
| | msmE_5 | Multiple sugar-binding protein precursor. (447 aa) |
| | KJQ52920.1 | Hypothetical protein. (193 aa) |
| | rpsB | 30S ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family. (331 aa) |
| | rpsP | 30S ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family. (144 aa) |
| | smc_2 | Chromosome partition protein Smc; Required for chromosome condensation and partitioning. Belongs to the SMC family. (1181 aa) |
| | rpmF | 50S ribosomal protein L32; Belongs to the bacterial ribosomal protein bL32 family. (69 aa) |
| | KJQ53005.1 | ATP-dependent protease La (LON) domain protein. (198 aa) |
| | KJQ53015.1 | Eukaryotic DNA topoisomerase I, catalytic core. (337 aa) |
| | rpsO | 30S ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome. (89 aa) |
| | msmE_6 | Multiple sugar-binding protein precursor. (414 aa) |
| | opuCB | Glycine betaine/carnitine/choline transport system permease protein OpuCB. (243 aa) |
| | recQ_3 | ATP-dependent DNA helicase RecQ. (546 aa) |
| | KJQ52510.1 | Hypothetical protein. (189 aa) |
| | pknB | Serine/threonine-protein kinase PknB. (563 aa) |
