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recB recB F543_7640 F543_7640 recD recD eno eno ruvC ruvC hscB hscB F543_9970 F543_9970 AHG85164.1 AHG85164.1 recC recC AHG84972.1 AHG84972.1 rnpA rnpA dnaG dnaG AHG84841.1 AHG84841.1 AHG84788.1 AHG84788.1 accC accC gpsA gpsA sucD sucD F543_1760 F543_1760 F543_1750 F543_1750 uvrC uvrC ruvB ruvB ruvA ruvA AHG84496.1 AHG84496.1 recG recG pdxT pdxT AHG84169.1 AHG84169.1 xseA xseA AHG84126.1 AHG84126.1 F543_1230 F543_1230 AHG84075.1 AHG84075.1 AHG84074.1 AHG84074.1 aceE aceE AHG84019.1 AHG84019.1 AHG84006.1 AHG84006.1 AHG83996.1 AHG83996.1 dnaX dnaX AHG83976.1 AHG83976.1 glgC glgC citF citF citE citE sucA sucA odhB odhB rpoZ rpoZ iolD iolD leuD leuD leuC leuC accA accA accD accD AHG84218.1 AHG84218.1 AHG84211.1 AHG84211.1 AHG84210.1 AHG84210.1 uvrB uvrB AHG84185.1 AHG84185.1 AHG84183.1 AHG84183.1 AHG84182.1 AHG84182.1 uvrA uvrA AHG85198.1 AHG85198.1 F543_2750 F543_2750 rpoA rpoA coaBC coaBC F543_3590 F543_3590 F543_3600 F543_3600 carA carA hslV hslV hslU hslU trmB trmB ribH ribH clpX clpX F543_5390 F543_5390 rpoB rpoB rpoC rpoC F543_600 F543_600 F543_6200 F543_6200
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query proteins and first shell of interactors
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second shell of interactors
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proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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from curated databases
experimentally determined
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gene neighborhood
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recBExodeoxyribonuclease V beta chain; A helicase/nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repai [...] (1200 aa)
F543_7640DNA polymerase III subunit delta PRK05574; DNA polymerase III subunit delta of Gammaproteobacteria UniRef RepID=HOLA_HAEIN. (341 aa)
recDExodeoxyribonuclease V, alpha subunit; A helicase/nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and r [...] (652 aa)
enoEnolase; Catalyzes the reversible conversion of 2-phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis. (441 aa)
ruvCCrossover junction endodeoxyribonuclease RuvC; Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group. (197 aa)
hscBCo-chaperone protein hscB; Co-chaperone involved in the maturation of iron-sulfur cluster-containing proteins. Seems to help targeting proteins to be folded toward HscA; Belongs to the HscB family. (173 aa)
F543_9970Hypothetical protein; Exodeoxyribonuclease VII small subunit PRK00977; UPI00021AD122 cluster of unknown UniRef RepID=UPI00021AD122. (74 aa)
AHG85164.1Possible flavin-dependent dehydrogenase of Pasteurellaceae UniRef RepID=A7JRR3_PASHA. (314 aa)
recCExodeoxyribonuclease V, gamma subunit; A helicase/nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and r [...] (1095 aa)
AHG84972.1DNA polymerase III subunit delta' PRK06871; DNA polymerase III subunit delta of Pasteurellaceae UniRef RepID=B8F7F9_HAEPS. (329 aa)
rnpARibonuclease P protein component; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme. (112 aa)
dnaGDNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. (584 aa)
AHG84841.1DNA polymerase III subunit chi of Pasteurellaceae UniRef RepID=HOLC_HAEIN. (139 aa)
AHG84788.1Biotin carboxyl carrier protein of acetyl-CoA carboxylase; This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA. (155 aa)
accCBiotin carboxylase; This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA. (447 aa)
gpsANAD(P)H-dependent glycerol-3-phosphate dehydrogenase PRK00094; Glycerol-3-phosphate dehydrogenase [NAD(P)+] of cellular organisms UniRef RepID=GPDA_PHOLL; Belongs to the NAD-dependent glycerol-3-phosphate dehydrogenase family. (340 aa)
sucDSuccinyl-CoA ligase [ADP-forming] subunit alpha; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit. (289 aa)
F543_1760DNA polymerase III subunit beta PRK05643; DNA polymerase III subunit beta of Gammaproteobacteria UniRef RepID=DPO3B_VIBCH; overlaps CDS with the same product name. (153 aa)
F543_1750DNA polymerase III subunit beta; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] (216 aa)
uvrCUvrABC system protein C; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision. (611 aa)
ruvBHolliday junction ATP-dependent DNA helicase RuvB; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. (334 aa)
ruvAHolliday junction DNA helicase motor protein; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. RuvA stimulates, in the presence of DNA, the weak ATPase activity of RuvB. (201 aa)
AHG84496.1DNA polymerase III psi subunit protein; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity. The exact function of the psi subunit is unknown. (140 aa)
recGATP-dependent DNA helicase recG; Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y- DNA); Belongs to the helicase family. RecG subfamily. (693 aa)
pdxTGlutamine amidotransferase subunit pdxT; Catalyzes the hydrolysis of glutamine to glutamate and ammonia as part of the biosynthesis of pyridoxal 5'-phosphate. The resulting ammonia molecule is channeled to the active site of PdxS. (188 aa)
AHG84169.1Cytochrome b subunit of formate dehydrogenase COG2864; Formate dehydrogenase (Quinone-dependent) cytochrome b subunit of Proteobacteria UniRef RepID=A4WAJ8_ENT38. (226 aa)
xseAExodeoxyribonuclease 7 large subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseA family. (496 aa)
AHG84126.1Reductase; Enoyl-(acyl carrier protein) reductase PRK07984; Enoyl-[acyl-carrier-protein] reductase [NADH] FabI of root UniRef RepID=FABI_HAEIN. (260 aa)
F543_1230Restriction endonuclease S subunits COG0732; Probable type I restriction-modification system specificity protein of Haemophilus influenzae UniRef RepID=A9YUI0_HAEIF. (431 aa)
AHG84075.1Pyruvate dehydrogenase dihydrolipoyltransacetylase PRK11854; Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex of Pasteurellaceae UniRef RepID=ODP2_HAEIN. (104 aa)
AHG84074.1Dihydrolipoamide acetyltransferase; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). (529 aa)
aceEPyruvate dehydrogenase E1 component; Component of the pyruvate dehydrogenase (PDH) complex, that catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). (887 aa)
AHG84019.1Hypothetical protein; Restriction endonuclease S subunits COG0732; Restriction modification system DNA specificity domain protein of Bacteria UniRef RepID=D5EDF9_AMICL. (368 aa)
AHG84006.1Acetolactate synthase 3 catalytic subunit PRK06882; Acetolactate synthase isozyme 3 large subunit of Proteobacteria UniRef RepID=ILVI_ECOLI. (573 aa)
AHG83996.1DNA polymerase III subunits gamma and tau PRK07994; DNA polymerase III subunits gamma and tau of Gammaproteobacteria UniRef RepID=B8F323_HAEPS. (205 aa)
dnaXDNA polymerase III subunits gamma and tau; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity. (457 aa)
AHG83976.1High-affinity Fe2+/Pb2+ permease COG0672; FTR1 family iron permease of Gammaproteobacteria UniRef RepID=C5S155_9PAST. (561 aa)
glgCGlucose-1-phosphate adenylyltransferase; Involved in the biosynthesis of ADP-glucose, a building block required for the elongation reactions to produce glycogen. Catalyzes the reaction between ATP and alpha-D-glucose 1-phosphate (G1P) to produce pyrophosphate and ADP-Glc; Belongs to the bacterial/plant glucose-1-phosphate adenylyltransferase family. (426 aa)
citFCitrate lyase alpha chain of Bacteria UniRef RepID=CILA_HAEIN. (502 aa)
citECitrate lyase subunit beta of Bacteria UniRef RepID=CITE_HAEIN; Belongs to the HpcH/HpaI aldolase family. (295 aa)
sucA2-oxoglutarate dehydrogenase E1 component PRK09404; 2-oxoglutarate dehydrogenase E1 component of Gammaproteobacteria UniRef RepID=ODO1_HAEIN. (935 aa)
odhBDihydrolipoamide succinyltransferase; E2 component of the 2-oxoglutarate dehydrogenase (OGDH) complex which catalyzes the second step in the conversion of 2- oxoglutarate to succinyl-CoA and CO(2). (408 aa)
rpoZDNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. (93 aa)
iolDIolD; Acetolactate synthase COG3962; IolD of Bacteria UniRef RepID=D4GD77_PANAM; Belongs to the TPP enzyme family. (644 aa)
leuD3-isopropylmalate dehydratase large subunit-like protein; Catalyzes the isomerization between 2-isopropylmalate and 3- isopropylmalate, via the formation of 2-isopropylmaleate. Belongs to the LeuD family. LeuD type 1 subfamily. (219 aa)
leuC3-isopropylmalate dehydratase large subunit-like protein; Catalyzes the isomerization between 2-isopropylmalate and 3- isopropylmalate, via the formation of 2-isopropylmaleate. (468 aa)
accAAcetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Component of the acetyl coenzyme A carboxylase (ACC) complex. First, biotin carboxylase catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the carboxyltransferase to acetyl-CoA to form malonyl-CoA. (317 aa)
accDAcetyl-CoA carboxylase, carboxyl transferase, beta subunit; Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl-CoA; Belongs to the AccD/PCCB family. (298 aa)
AHG84218.1Molybdopterin synthase small subunit PRK11130; Molybdopterin synthase sulfur carrier subunit of cellular organisms UniRef RepID=MOAD_HAEIN. (81 aa)
AHG84211.1Predicted glutamine amidotransferase COG0121; Class II glutamine amidotransferase domain protein of Pasteurellaceae UniRef RepID=F9Q659_9PAST. (86 aa)
AHG84210.1Predicted glutamine amidotransferase COG0121; glutamine amidotransferase HI_1037 of Pasteurellaceae UniRef RepID=Y1037_HAEIN. (161 aa)
uvrBUvrABC system protein B; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. Upon binding of the UvrA(2)B(2) complex to a putative damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate and [...] (672 aa)
AHG84185.1Excinuclease ABC subunit B PRK05298; Excinuclease ABC subunit B of Gammaproteobacteria UniRef RepID=A4NXJ6_HAEIF. (87 aa)
AHG84183.1Reductase; Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides. (756 aa)
AHG84182.1Reductase; Ribonucleotide-diphosphate reductase subunit beta PRK09101; Ribonucleoside-diphosphate reductase class Ia beta subunit of root UniRef RepID=Q081T5_SHEFN. (359 aa)
uvrAUvrABC system protein A; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate. (942 aa)
AHG85198.1FMN-dependent oxidoreductase, nitrilotriacetate monooxygenase family of Staphylococcus warneri VCU121 UniRef RepID=F3SQM5_STAWA. (422 aa)
F543_2750Biotin carboxylase COG0439; Phosphoribosylglycinamide synthetase of Bacteria UniRef RepID=A6VP22_ACTSZ. (392 aa)
rpoADNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (329 aa)
coaBCPhosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase; Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4- phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine; In the C-terminal section; belongs to the PPC synthetase family. (403 aa)
F543_3590Ribonucleotide-diphosphate reductase subunit alpha PRK09102; Ribonucleotide reductase, alpha subunit of root UniRef RepID=A5EVD2_DICNV. (555 aa)
F543_3600Reductase; Ribonucleotide-diphosphate reductase subunit beta PRK13967; Ribonucleotide reductase beta chain of Environmental halophage 1 AAJ-2005 UniRef RepID=Q2XUY1_9VIRU. (325 aa)
carACarbamoyl phosphate synthase small subunit PRK12564; Carbamoyl-phosphate synthase small chain of root UniRef RepID=CARA_POLSQ; Belongs to the CarA family. (379 aa)
hslVATP-dependent protease subunit HslV; Protease subunit of a proteasome-like degradation complex believed to be a general protein degrading machinery. (173 aa)
hslUATP-dependent protease ATPase subunit HslU; ATPase subunit of a proteasome-like degradation complex; this subunit has chaperone activity. The binding of ATP and its subsequent hydrolysis by HslU are essential for unfolding of protein substrates subsequently hydrolyzed by HslV. HslU recognizes the N-terminal part of its protein substrates and unfolds these before they are guided to HslV for hydrolysis. (438 aa)
trmBtRNA (guanine-N(7)-)-methyltransferase; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. (248 aa)
ribH6,7-dimethyl-8-ribityllumazine synthase; Catalyzes the formation of 6,7-dimethyl-8-ribityllumazine by condensation of 5-amino-6-(D-ribitylamino)uracil with 3,4-dihydroxy-2- butanone 4-phosphate. This is the penultimate step in the biosynthesis of riboflavin; Belongs to the DMRL synthase family. (153 aa)
clpXATP-dependent Clp protease ATP-binding subunit ClpX; ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP. (417 aa)
F543_5390GMP reductase; Catalyzes the irreversible NADPH-dependent deamination of GMP to IMP. It functions in the conversion of nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and in maintaining the intracellular balance of A and G nucleotides. Belongs to the IMPDH/GMPR family. GuaC type 2 subfamily. (324 aa)
rpoBDNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1342 aa)
rpoCDNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1425 aa)
F543_600DNA-directed RNA polymerase subunit beta' PRK00566; DNA-directed RNA polymerase subunit beta' of Bacteria UniRef RepID=RPOC_BLOPB. (168 aa)
F543_6200Sn-glycerol-3-phosphate dehydrogenase subunit A PRK11101; Anaerobic glycerol-3-phosphate dehydrogenase subunit A of Bacteria UniRef RepID=GLPA_HAEIN; Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family. (563 aa)
Your Current Organism:
Bibersteinia trehalosi
NCBI taxonomy Id: 1263831
Other names: B. trehalosi USDA-ARS-USMARC-189, Bibersteinia trehalosi USDA-ARS-USMARC-189
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