STRINGSTRING
AHG83870.1 AHG83870.1 glnD glnD F543_1040 F543_1040 citC citC citD citD citE citE citF citF citG citG cpxA cpxA AHG83923.1 AHG83923.1 csrA csrA glsA glsA AHG84363.1 AHG84363.1 AHG84364.1 AHG84364.1 AHG84365.1 AHG84365.1 AHG84366.1 AHG84366.1 cydB cydB AHG84385.1 AHG84385.1 AHG84436.1 AHG84436.1 AHG84441.1 AHG84441.1 ttrB ttrB AHG84444.1 AHG84444.1 AHG84445.1 AHG84445.1 dnaA dnaA AHG84786.1 AHG84786.1 AHG84824.1 AHG84824.1 AHG84897.1 AHG84897.1 AHG84898.1 AHG84898.1 frdC frdC frdD frdD arcA arcA AHG85051.1 AHG85051.1 AHG85233.1 AHG85233.1 glnA glnA F543_3290 F543_3290 F543_3300 F543_3300 qseC qseC F543_880 F543_880
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
AHG83870.1Aerobic respiration control sensor protein ArcB PRK11091; Aerobic respiration control sensor protein ArcB of Pasteurellaceae UniRef RepID=B8F495_HAEPS. (742 aa)
glnD[Protein-PII] uridylyltransferase; Modifies, by uridylylation and deuridylylation, the PII regulatory proteins (GlnB and homologs), in response to the nitrogen status of the cell that GlnD senses through the glutamine level. Under low glutamine levels, catalyzes the conversion of the PII proteins and UTP to PII-UMP and PPi, while under higher glutamine levels, GlnD hydrolyzes PII-UMP to PII and UMP (deuridylylation). Thus, controls uridylylation state and activity of the PII proteins, and plays an important role in the regulation of nitrogen metabolism. (863 aa)
F543_1040Catabolite gene activator protein; DNA-binding transcriptional dual regulator Crp PRK11753; Catabolite gene activator protein of Gammaproteobacteria UniRef RepID=CRP_ECO57. (182 aa)
citC[citrate (Pro-3S)-lyase] ligase; Acetylation of prosthetic group (2-(5''-phosphoribosyl)-3'- dephosphocoenzyme-A) of the gamma subunit of citrate lyase. (335 aa)
citDCitrate lyase acyl carrier protein; Covalent carrier of the coenzyme of citrate lyase. (95 aa)
citECitrate lyase subunit beta of Bacteria UniRef RepID=CITE_HAEIN; Belongs to the HpcH/HpaI aldolase family. (295 aa)
citFCitrate lyase alpha chain of Bacteria UniRef RepID=CILA_HAEIN. (502 aa)
citGProtein CitXG of Gammaproteobacteria UniRef RepID=CITXG_HAEIN. (435 aa)
cpxATwo-component sensor protein PRK09470; Two-component sensor protein/signal transduction histidine kinase of Haemophilus parasuis UniRef RepID=B8F3X2_HAEPS. (461 aa)
AHG83923.1DNA-binding transcriptional regulator CpxR PRK10955; Transcriptional regulatory protein CpxR of Bacteria UniRef RepID=CPXR_ECO57. (238 aa)
csrACarbon storage regulator; A key translational regulator that binds mRNA to regulate translation initiation and/or mRNA stability. Mediates global changes in gene expression, shifting from rapid growth to stress survival by linking envelope stress, the stringent response and the catabolite repression systems. Usually binds in the 5'-UTR; binding at or near the Shine-Dalgarno sequence prevents ribosome-binding, repressing translation, binding elsewhere in the 5'-UTR can activate translation and/or stabilize the mRNA. Its function is antagonized by small RNA(s). (60 aa)
glsAGlutaminase PRK00971; Glutaminase of Bacteroidetes UniRef RepID=A3U907_CROAH; Belongs to the glutaminase family. (305 aa)
AHG84363.1Acyltransferase PRK05790; Acetyl-CoA acetyltransferase of cellular organisms UniRef RepID=THIL_CUPNH; Belongs to the thiolase-like superfamily. Thiolase family. (393 aa)
AHG84364.1Short-chain fatty acids transporter of Bacteria UniRef RepID=ATOE_HAEIN. (447 aa)
AHG84365.1Acetate CoA-transferase subunit beta of Bacteria UniRef RepID=ATOA_HAEIN. (219 aa)
AHG84366.1acetyl-CoA:acetoacetyl-CoA transferase subunit alpha PRK09920; Acetate CoA-transferase subunit alpha of Bacteria UniRef RepID=ATOD_HAEIN. (215 aa)
cydBCytochrome bd-II oxidase subunit 2 PRK15028; Cytochrome d ubiquinol oxidase subunit 2 of Bacteria UniRef RepID=CYDB_ECO57. (378 aa)
AHG84385.1Cytochrome d terminal oxidase subunit 1 PRK15097; Cytochrome d ubiquinol oxidase subunit 1 of root UniRef RepID=CYDA_AZOVI. (516 aa)
AHG84436.1Molybdopterin oxidoreductase; Tetrathionate reductase subunit A PRK14991; Molybdopterin oxidoreductase of Gammaproteobacteria UniRef RepID=B0UU96_HAES2. (563 aa)
AHG84441.1Reductase; Tetrathionate reductase subunit C PRK14992; Tetrathionate reductase subunit C of Mannheimia haemolytica UniRef RepID=A7JTF1_PASHA. (365 aa)
ttrBReductase; Tetrathionate reductase subunit B PRK14993; Tetrathionate reductase subunit B of Proteobacteria UniRef RepID=A7JTF2_PASHA. (241 aa)
AHG84444.1TtrS; Sensory histidine kinase AtoS PRK11360; TtrS of Pasteurella multocida subsp. multocida UniRef RepID=Q9CMT4_PASMU. (551 aa)
AHG84445.1Reductase; Response regulator COG4566; Tetrathionate reductase regulon response regulator of Gammaproteobacteria UniRef RepID=A7JTF8_PASHA. (203 aa)
dnaAChromosomal replication initiator protein DnaA; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'- TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids. Belongs to the DnaA family. (405 aa)
AHG84786.1Anaerobic C4-dicarboxylate transporter; Responsible for the transport of C4-dicarboxylates from the periplasm across the inner membrane; Belongs to the DcuA/DcuB transporter (TC 2.A.13.1) family. (445 aa)
AHG84824.1Periplasmic protein involved in polysaccharide export, contains SLBB domain of b-grasp fold COG1596; Capsule polysaccharide export protein BexD of Proteobacteria UniRef RepID=BEXD_HAEIF. (393 aa)
AHG84897.1Fumarate reductase flavoprotein subunit PRK09231; Fumarate reductase flavoprotein subunit of cellular organisms UniRef RepID=FRDA_HAEIN. (596 aa)
AHG84898.1Fumarate reductase iron-sulfur subunit PRK12385; Fumarate reductase iron-sulfur subunit of Proteobacteria UniRef RepID=FRDB_HAEIN; Belongs to the succinate dehydrogenase/fumarate reductase iron-sulfur protein family. (255 aa)
frdCReductase; Seems to be involved in the anchoring of the catalytic components of the fumarate reductase complex to the cytoplasmic membrane. (129 aa)
frdDReductase; Seems to be involved in the anchoring of the catalytic components of the fumarate reductase complex to the cytoplasmic membrane. (114 aa)
arcATwo-component response regulator PRK11173; Aerobic respiration control protein ArcA of Gammaproteobacteria UniRef RepID=B5FAK4_VIBFM. (238 aa)
AHG85051.1Nitrogen regulatory protein P-II of Bacteria UniRef RepID=D3DJN0_HYDTT; Belongs to the P(II) protein family. (112 aa)
AHG85233.1Two component transcriptional regulator, Fis; Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains COG2204; Two component transcriptional regulator, Fis family of Pasteurellaceae UniRef RepID=A6VQ26_ACTSZ. (418 aa)
glnAGlutamine synthetase PRK09469; Glutamine synthetase of cellular organisms UniRef RepID=GLNA_SYNY3. (523 aa)
F543_3290UDP-N-acetyl-D-mannosamine dehydrogenase PRK11064; UDP-N-acetyl-D-mannosamine dehydrogenase of Proteobacteria UniRef RepID=B4F1W0_PROMH; Belongs to the UDP-glucose/GDP-mannose dehydrogenase family. (409 aa)
F543_3300UDP-N-acetylglucosamine 2-epimerase of Bacteria UniRef RepID=WECB_SALTY; Belongs to the UDP-N-acetylglucosamine 2-epimerase family. (338 aa)
qseCSensor protein QseC PRK10337; Sensor protein qseC of Gammaproteobacteria UniRef RepID=QSEC_HAEIN. (437 aa)
F543_880DNA-binding transcriptional regulator QseB PRK10336; Transcriptional regulatory protein qseB of Bacteria UniRef RepID=QSEB_HAEIN. (224 aa)
Your Current Organism:
Bibersteinia trehalosi
NCBI taxonomy Id: 1263831
Other names: B. trehalosi USDA-ARS-USMARC-189, Bibersteinia trehalosi USDA-ARS-USMARC-189
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