(32 nodes) Mixed, incl. RNA helicase activity, and NUDIX domain network (Colwellia piezophila)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	GCA_000378625_00026	Unannotated protein. (143 aa)
	GCA_000378625_00109	Unannotated protein. (163 aa)
	GCA_000378625_00230	Unannotated protein. (171 aa)
	GCA_000378625_00241	Unannotated protein. (203 aa)
	GCA_000378625_00375	Unannotated protein. (216 aa)
	GCA_000378625_00554	Unannotated protein. (450 aa)
	GCA_000378625_00589	Unannotated protein. (551 aa)
	GCA_000378625_00697	Unannotated protein. (737 aa)
	GCA_000378625_01103	Unannotated protein. (504 aa)
	GCA_000378625_01277	Unannotated protein. (441 aa)
	GCA_000378625_01421	Unannotated protein. (468 aa)
	GCA_000378625_01629	Unannotated protein. (296 aa)
	GCA_000378625_02007	Unannotated protein. (1388 aa)
	GCA_000378625_02025	Unannotated protein. (449 aa)
	GCA_000378625_02170	Unannotated protein. (318 aa)
	GCA_000378625_02198	Unannotated protein. (1377 aa)
	GCA_000378625_02455	Unannotated protein. (956 aa)
	GCA_000378625_02714	Unannotated protein. (823 aa)
	GCA_000378625_02802	Unannotated protein. (213 aa)
	GCA_000378625_02864	Unannotated protein. (260 aa)
	GCA_000378625_02886	Unannotated protein. (417 aa)
	GCA_000378625_03161	Unannotated protein. (440 aa)
	GCA_000378625_03448	Unannotated protein. (188 aa)
	GCA_000378625_03492	Unannotated protein. (636 aa)
	GCA_000378625_03660	Unannotated protein. (428 aa)
	GCA_000378625_03794	Unannotated protein. (465 aa)
	GCA_000378625_03819	Unannotated protein. (404 aa)
	GCA_000378625_03956	Unannotated protein. (155 aa)
	GCA_000378625_04179	Unannotated protein. (310 aa)
	GCA_000378625_04191	Unannotated protein. (189 aa)
	GCA_000378625_04248	Unannotated protein. (450 aa)
	GCA_000378625_04553	Unannotated protein. (416 aa)

Your Current Organism:

Colwellia piezophila

NCBI taxonomy Id: 1265503
Other names: C. piezophila ATCC BAA-637, Colwellia piezophila ATCC BAA-637

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
GCA_000378625_00026	GCA_000378625_00554	Unannotated protein.	Unannotated protein.	0.825
GCA_000378625_00026	GCA_000378625_01277	Unannotated protein.	Unannotated protein.	0.825
GCA_000378625_00026	GCA_000378625_01421	Unannotated protein.	Unannotated protein.	0.825
GCA_000378625_00026	GCA_000378625_02025	Unannotated protein.	Unannotated protein.	0.825
GCA_000378625_00026	GCA_000378625_02198	Unannotated protein.	Unannotated protein.	0.871
GCA_000378625_00026	GCA_000378625_02714	Unannotated protein.	Unannotated protein.	0.871
GCA_000378625_00026	GCA_000378625_02864	Unannotated protein.	Unannotated protein.	0.898
GCA_000378625_00026	GCA_000378625_02886	Unannotated protein.	Unannotated protein.	0.825
GCA_000378625_00026	GCA_000378625_03660	Unannotated protein.	Unannotated protein.	0.825
GCA_000378625_00026	GCA_000378625_03794	Unannotated protein.	Unannotated protein.	0.825
GCA_000378625_00026	GCA_000378625_03819	Unannotated protein.	Unannotated protein.	0.825
GCA_000378625_00026	GCA_000378625_04248	Unannotated protein.	Unannotated protein.	0.825
GCA_000378625_00026	GCA_000378625_04553	Unannotated protein.	Unannotated protein.	0.825
GCA_000378625_00109	GCA_000378625_00554	Unannotated protein.	Unannotated protein.	0.850
GCA_000378625_00109	GCA_000378625_00697	Unannotated protein.	Unannotated protein.	0.886
GCA_000378625_00109	GCA_000378625_01103	Unannotated protein.	Unannotated protein.	0.671
GCA_000378625_00109	GCA_000378625_01277	Unannotated protein.	Unannotated protein.	0.850
GCA_000378625_00109	GCA_000378625_01421	Unannotated protein.	Unannotated protein.	0.850
GCA_000378625_00109	GCA_000378625_01629	Unannotated protein.	Unannotated protein.	0.650
GCA_000378625_00109	GCA_000378625_02007	Unannotated protein.	Unannotated protein.	0.806