(33 nodes) Butanoate metabolism network (Colwellia piezophila)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	GCA_000378625_02179	Unannotated protein. (124 aa)
	GCA_000378625_04265	Unannotated protein. (390 aa)
	GCA_000378625_04554	Unannotated protein. (245 aa)
	GCA_000378625_00623	Unannotated protein. (165 aa)
	GCA_000378625_00627	Unannotated protein. (575 aa)
	GCA_000378625_00707	Unannotated protein. (376 aa)
	GCA_000378625_00843	Unannotated protein. (47 aa)
	GCA_000378625_00997	Unannotated protein. (396 aa)
	GCA_000378625_01059	Unannotated protein. (241 aa)
	GCA_000378625_01154	Unannotated protein. (273 aa)
	GCA_000378625_01294	Unannotated protein. (485 aa)
	GCA_000378625_01295	Unannotated protein. (426 aa)
	GCA_000378625_01327	Unannotated protein. (510 aa)
	GCA_000378625_01590	Unannotated protein. (312 aa)
	GCA_000378625_01801	Unannotated protein. (443 aa)
	GCA_000378625_01964	Unannotated protein. (228 aa)
	GCA_000378625_04264	Unannotated protein. (262 aa)
	GCA_000378625_04262	Unannotated protein. (398 aa)
	GCA_000378625_04256	Unannotated protein. (315 aa)
	GCA_000378625_04255	Unannotated protein. (241 aa)
	GCA_000378625_04254	Unannotated protein. (218 aa)
	GCA_000378625_04196	Unannotated protein. (618 aa)
	GCA_000378625_04070	Unannotated protein. (554 aa)
	GCA_000378625_04069	Unannotated protein. (85 aa)
	GCA_000378625_03846	Unannotated protein. (722 aa)
	GCA_000378625_03358	Unannotated protein. (119 aa)
	GCA_000378625_03196	Unannotated protein. (166 aa)
	GCA_000378625_03194	Unannotated protein. (392 aa)
	GCA_000378625_02596	Unannotated protein. (292 aa)
	GCA_000378625_02182	Unannotated protein. (236 aa)
	GCA_000378625_02181	Unannotated protein. (589 aa)
	GCA_000378625_02180	Unannotated protein. (115 aa)
	GCA_000378625_02083	Unannotated protein. (754 aa)

Your Current Organism:

Colwellia piezophila

NCBI taxonomy Id: 1265503
Other names: C. piezophila ATCC BAA-637, Colwellia piezophila ATCC BAA-637

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Export your current network:

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same PNG format, but at higher resolution

... as a vector graphic:

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
GCA_000378625_00623	GCA_000378625_00627	Unannotated protein.	Unannotated protein.	0.999
GCA_000378625_00623	GCA_000378625_01295	Unannotated protein.	Unannotated protein.	0.454
GCA_000378625_00623	GCA_000378625_02182	Unannotated protein.	Unannotated protein.	0.609
GCA_000378625_00623	GCA_000378625_04069	Unannotated protein.	Unannotated protein.	0.953
GCA_000378625_00623	GCA_000378625_04070	Unannotated protein.	Unannotated protein.	0.999
GCA_000378625_00623	GCA_000378625_04256	Unannotated protein.	Unannotated protein.	0.843
GCA_000378625_00627	GCA_000378625_00623	Unannotated protein.	Unannotated protein.	0.999
GCA_000378625_00627	GCA_000378625_00707	Unannotated protein.	Unannotated protein.	0.814
GCA_000378625_00627	GCA_000378625_01154	Unannotated protein.	Unannotated protein.	0.424
GCA_000378625_00627	GCA_000378625_01964	Unannotated protein.	Unannotated protein.	0.410
GCA_000378625_00627	GCA_000378625_02083	Unannotated protein.	Unannotated protein.	0.525
GCA_000378625_00627	GCA_000378625_02182	Unannotated protein.	Unannotated protein.	0.570
GCA_000378625_00627	GCA_000378625_02596	Unannotated protein.	Unannotated protein.	0.424
GCA_000378625_00627	GCA_000378625_03196	Unannotated protein.	Unannotated protein.	0.410
GCA_000378625_00627	GCA_000378625_03846	Unannotated protein.	Unannotated protein.	0.525
GCA_000378625_00627	GCA_000378625_04069	Unannotated protein.	Unannotated protein.	0.927
GCA_000378625_00627	GCA_000378625_04070	Unannotated protein.	Unannotated protein.	0.898
GCA_000378625_00627	GCA_000378625_04196	Unannotated protein.	Unannotated protein.	0.723
GCA_000378625_00627	GCA_000378625_04256	Unannotated protein.	Unannotated protein.	0.624
GCA_000378625_00627	GCA_000378625_04264	Unannotated protein.	Unannotated protein.	0.424