(6 nodes) General transcription initiation factor binding, and DNA-directed RNA polymerase network (Plasmodium vivax)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	PVX_118135	Uncharacterized protein. (530 aa)
	PVX_099560	DNA-directed RNA polymerase II, putative. (333 aa)
	PVX_081260	Transcription initiation factor TFIIB, putative. (366 aa)
	PVX_002755	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1339 aa)
	PVX_136260	DNA-directed RNA polymerase 2 subunit, putative, truncated. (178 aa)
	PVX_111350	DNA-directed RNA polymerase II, putative. (177 aa)

Your Current Organism:

Plasmodium vivax

NCBI taxonomy Id: 126793
Other names: P. vivax Sal-1, Plasmodium vivax (STRAIN SAL-I), Plasmodium vivax (strain Salvador I), Plasmodium vivax SaI-1, Plasmodium vivax Sal-1, Plasmodium vivax Salvador I

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PVX_002755	PVX_081260	A5KBW7	A5K9R2	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Transcription initiation factor TFIIB, putative.	0.999
PVX_002755	PVX_099560	A5KBW7	A5K6U4	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	DNA-directed RNA polymerase II, putative.	0.999
PVX_002755	PVX_111350	A5KBW7	A5KE18	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	DNA-directed RNA polymerase II, putative.	0.999
PVX_002755	PVX_118135	A5KBW7	A5K3T9	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Uncharacterized protein.	0.999
PVX_002755	PVX_136260	A5KBW7	A5KDM5	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	DNA-directed RNA polymerase 2 subunit, putative, truncated.	0.999
PVX_081260	PVX_002755	A5K9R2	A5KBW7	Transcription initiation factor TFIIB, putative.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.999
PVX_081260	PVX_099560	A5K9R2	A5K6U4	Transcription initiation factor TFIIB, putative.	DNA-directed RNA polymerase II, putative.	0.998
PVX_081260	PVX_111350	A5K9R2	A5KE18	Transcription initiation factor TFIIB, putative.	DNA-directed RNA polymerase II, putative.	0.997
PVX_081260	PVX_118135	A5K9R2	A5K3T9	Transcription initiation factor TFIIB, putative.	Uncharacterized protein.	0.998
PVX_081260	PVX_136260	A5K9R2	A5KDM5	Transcription initiation factor TFIIB, putative.	DNA-directed RNA polymerase 2 subunit, putative, truncated.	0.997
PVX_099560	PVX_002755	A5K6U4	A5KBW7	DNA-directed RNA polymerase II, putative.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.999
PVX_099560	PVX_081260	A5K6U4	A5K9R2	DNA-directed RNA polymerase II, putative.	Transcription initiation factor TFIIB, putative.	0.998
PVX_099560	PVX_111350	A5K6U4	A5KE18	DNA-directed RNA polymerase II, putative.	DNA-directed RNA polymerase II, putative.	0.999
PVX_099560	PVX_118135	A5K6U4	A5K3T9	DNA-directed RNA polymerase II, putative.	Uncharacterized protein.	0.999
PVX_099560	PVX_136260	A5K6U4	A5KDM5	DNA-directed RNA polymerase II, putative.	DNA-directed RNA polymerase 2 subunit, putative, truncated.	0.999
PVX_111350	PVX_002755	A5KE18	A5KBW7	DNA-directed RNA polymerase II, putative.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.999
PVX_111350	PVX_081260	A5KE18	A5K9R2	DNA-directed RNA polymerase II, putative.	Transcription initiation factor TFIIB, putative.	0.997
PVX_111350	PVX_099560	A5KE18	A5K6U4	DNA-directed RNA polymerase II, putative.	DNA-directed RNA polymerase II, putative.	0.999
PVX_111350	PVX_118135	A5KE18	A5K3T9	DNA-directed RNA polymerase II, putative.	Uncharacterized protein.	0.999
PVX_111350	PVX_136260	A5KE18	A5KDM5	DNA-directed RNA polymerase II, putative.	DNA-directed RNA polymerase 2 subunit, putative, truncated.	0.999

page 1 of 2

Server load: low (20%) [HD]

Permalink

Network

Neighborhood

Experiments

Cooccurrence

Databases

Coexpression

Textmining

Fusion

© STRING Consortium 2025

Credits

Access

Info

About