(36 nodes) Catalytic step 2 spliceosome network (Plasmodium vivax)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	PVX_119245	Splicing regulatory protein, putative. (595 aa)
	PVX_116880	Isy1-like splicing domain containing protein. (206 aa)
	PVX_117375	Splicing factor 3B subunit 2, putative. (660 aa)
	PVX_117700	Pv-fam-g protein. (624 aa)
	PVX_117735	Pv-fam-g protein. (152 aa)
	PVX_118605	Uncharacterized protein. (627 aa)
	PVX_091160	U5 snRNP-associated 102 kDa protein, putative. (1296 aa)
	PVX_091195	Uncharacterized protein. (543 aa)
	PVX_091445	Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (167 aa)
	PVX_091960	U6 snRNA-associated Sm-like protein LSm6, putative. (86 aa)
	PVX_099995	Cyclophilin, putative. (616 aa)
	PVX_094390	U5 small nuclear ribonuclear protein, putative. (1251 aa)
	PVX_083530	Uncharacterized protein. (2310 aa)
	PVX_100745	Uncharacterized protein. (927 aa)
	PVX_100865	Cell cycle control protein, putative. (1144 aa)
	PVX_101300	RNA binding protein, putative. (390 aa)
	PVX_079815	Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (203 aa)
	PVX_080230	U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (103 aa)
	PVX_000970	Uncharacterized protein. (3019 aa)
	PVX_001060	Splicing factor, putative. (724 aa)
	PVX_098070	Cyclophilin, putative. (737 aa)
	PVX_089225	U5 snRNP-specific 40 kDa protein, putative. (324 aa)
	PVX_089250	Small nuclear ribonucleoprotein G. (83 aa)
	LSM3	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (91 aa)
	PVX_122555	Pinin_SDK_memA domain-containing protein. (506 aa)
	PVX_123645	Pre-mRNA splicing factor PRP17, putative. (612 aa)
	PVX_098930	Small nuclear ribonucleoprotein Sm D3. (116 aa)
	PVX_123875	Pre-mRNA branch site protein p14, putative. (110 aa)
	PVX_084490	U6 snRNA-associated Sm-like protein LSm7, putative. (107 aa)
	PVX_085320	Cyclophilin, putative. (388 aa)
	PVX_113855	Uncharacterized protein. (250 aa)
	PVX_114120	Splicing factor 3a subunit, putative. (216 aa)
	PVX_093580	Mitogen-activated protein kinase organizer 1, putative. (365 aa)
	PVX_096230	Uncharacterized protein. (284 aa)
	PVX_002615	Small nuclear ribonucleoprotein Sm D2. (101 aa)
	PVX_119560	Splicing factor 3B subunit 1, putative. (1360 aa)

Your Current Organism:

Plasmodium vivax

NCBI taxonomy Id: 126793
Other names: P. vivax Sal-1, Plasmodium vivax (STRAIN SAL-I), Plasmodium vivax (strain Salvador I), Plasmodium vivax SaI-1, Plasmodium vivax Sal-1, Plasmodium vivax Salvador I

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LSM3	PVX_000970	A5K5Q0	A5KAP1	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Uncharacterized protein.	0.999
LSM3	PVX_001060	A5K5Q0	A5KAQ8	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Splicing factor, putative.	0.979
LSM3	PVX_002615	A5K5Q0	A5KBT9	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Small nuclear ribonucleoprotein Sm D2.	0.998
LSM3	PVX_080230	A5K5Q0	A5K9F5	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.999
LSM3	PVX_084490	A5K5Q0	A5K0J1	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	U6 snRNA-associated Sm-like protein LSm7, putative.	0.999
LSM3	PVX_089225	A5K5Q0	A5K5M2	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	U5 snRNP-specific 40 kDa protein, putative.	0.753
LSM3	PVX_089250	A5K5Q0	A5K5M7	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Small nuclear ribonucleoprotein G.	0.979
LSM3	PVX_091160	A5K5Q0	A5K4B8	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	U5 snRNP-associated 102 kDa protein, putative.	0.985
LSM3	PVX_091445	A5K5Q0	A5K4H5	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.	0.445
LSM3	PVX_091960	A5K5Q0	A5K4S9	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	U6 snRNA-associated Sm-like protein LSm6, putative.	0.994
LSM3	PVX_094390	A5K5Q0	A5K760	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	U5 small nuclear ribonuclear protein, putative.	0.999
LSM3	PVX_096230	A5K5Q0	A5KC55	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Uncharacterized protein.	0.715
LSM3	PVX_098930	A5K5Q0	A5K6G7	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Small nuclear ribonucleoprotein Sm D3.	0.995
LSM3	PVX_101300	A5K5Q0	A5K8Y4	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	RNA binding protein, putative.	0.524
LSM3	PVX_114120	A5K5Q0	A5K235	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Splicing factor 3a subunit, putative.	0.791
LSM3	PVX_117375	A5K5Q0	A5K3D9	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Splicing factor 3B subunit 2, putative.	0.969
LSM3	PVX_117700	A5K5Q0	A5K3K3	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Pv-fam-g protein.	0.791
LSM3	PVX_117735	A5K5Q0	A5K3L0	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Pv-fam-g protein.	0.791
LSM3	PVX_118605	A5K5Q0	A5K432	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Uncharacterized protein.	0.967
LSM3	PVX_119245	A5K5Q0	A5KB41	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Splicing regulatory protein, putative.	0.549

page 1 of 51

Server load: low (20%) [HD]

Permalink

Network

Fusion

Experiments

Cooccurrence

Databases

Coexpression

Textmining

Neighborhood

© STRING Consortium 2025

Credits

Access

Info

About