14 items (Trichechus manatus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC101354131	Syntaxin-7; Belongs to the syntaxin family. (263 aa)
	LOC101348396	Syntaxin-16 isoform X1; Belongs to the syntaxin family. (322 aa)
	LOC101357687	Vesicle transport through interaction with t-SNAREs homolog 1B isoform X1. (232 aa)
	LOC101343174	Syntaxin-8. (236 aa)
	LOC101352194	Beta-soluble NSF attachment protein isoform X1. (298 aa)
	LOC101360406	Syntaxin-12 isoform X1; Belongs to the syntaxin family. (274 aa)
	LOC101342354	Vesicle-associated membrane protein 4. (141 aa)
	LOC101347111	Synaptobrevin homolog YKT6; Belongs to the synaptobrevin family. (198 aa)
	LOC101356256	Synaptosomal-associated protein 29. (253 aa)
	LOC101352241	Syntaxin-10; Belongs to the syntaxin family. (249 aa)
	LOC101359695	Syntaxin-17; Belongs to the syntaxin family. (302 aa)
	LOC101356293	Syntaxin-6 isoform X1; Belongs to the syntaxin family. (266 aa)
	LOC101347243	Vesicle transport through interaction with t-SNAREs homolog 1A isoform X1. (217 aa)
	LOC101344995	Vesicle-associated membrane protein 8. (101 aa)

Your Current Organism:

Trichechus manatus

NCBI taxonomy Id: 127582
Other names: Florida manatee, T. manatus latirostris, Trichechus manatus latirostris

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC101342354	LOC101343174	A0A2Y9DZU0	A0A2Y9DKS3	Vesicle-associated membrane protein 4.	Syntaxin-8.	0.857
LOC101342354	LOC101344995	A0A2Y9DZU0	A0A2Y9S1Y0	Vesicle-associated membrane protein 4.	Vesicle-associated membrane protein 8.	0.598
LOC101342354	LOC101347111	A0A2Y9DZU0	A0A2Y9E2V5	Vesicle-associated membrane protein 4.	Synaptobrevin homolog YKT6; Belongs to the synaptobrevin family.	0.707
LOC101342354	LOC101347243	A0A2Y9DZU0	A0A2Y9QQH8	Vesicle-associated membrane protein 4.	Vesicle transport through interaction with t-SNAREs homolog 1A isoform X1.	0.999
LOC101342354	LOC101348396	A0A2Y9DZU0	A0A2Y9D906	Vesicle-associated membrane protein 4.	Syntaxin-16 isoform X1; Belongs to the syntaxin family.	0.998
LOC101342354	LOC101352194	A0A2Y9DZU0	A0A2Y9DKX8	Vesicle-associated membrane protein 4.	Beta-soluble NSF attachment protein isoform X1.	0.779
LOC101342354	LOC101352241	A0A2Y9DZU0	A0A2Y9EAV8	Vesicle-associated membrane protein 4.	Syntaxin-10; Belongs to the syntaxin family.	0.947
LOC101342354	LOC101354131	A0A2Y9DZU0	A0A2Y9D6Z4	Vesicle-associated membrane protein 4.	Syntaxin-7; Belongs to the syntaxin family.	0.880
LOC101342354	LOC101356256	A0A2Y9DZU0	A0A2Y9E3A0	Vesicle-associated membrane protein 4.	Synaptosomal-associated protein 29.	0.689
LOC101342354	LOC101356293	A0A2Y9DZU0	A0A2Y9QPB3	Vesicle-associated membrane protein 4.	Syntaxin-6 isoform X1; Belongs to the syntaxin family.	0.994
LOC101342354	LOC101357687	A0A2Y9DZU0	A0A2Y9DAI9	Vesicle-associated membrane protein 4.	Vesicle transport through interaction with t-SNAREs homolog 1B isoform X1.	0.984
LOC101342354	LOC101359695	A0A2Y9DZU0	A0A2Y9QIK4	Vesicle-associated membrane protein 4.	Syntaxin-17; Belongs to the syntaxin family.	0.548
LOC101342354	LOC101360406	A0A2Y9DZU0	A0A2Y9DM54	Vesicle-associated membrane protein 4.	Syntaxin-12 isoform X1; Belongs to the syntaxin family.	0.912
LOC101343174	LOC101342354	A0A2Y9DKS3	A0A2Y9DZU0	Syntaxin-8.	Vesicle-associated membrane protein 4.	0.857
LOC101343174	LOC101344995	A0A2Y9DKS3	A0A2Y9S1Y0	Syntaxin-8.	Vesicle-associated membrane protein 8.	0.953
LOC101343174	LOC101347111	A0A2Y9DKS3	A0A2Y9E2V5	Syntaxin-8.	Synaptobrevin homolog YKT6; Belongs to the synaptobrevin family.	0.986
LOC101343174	LOC101347243	A0A2Y9DKS3	A0A2Y9QQH8	Syntaxin-8.	Vesicle transport through interaction with t-SNAREs homolog 1A isoform X1.	0.993
LOC101343174	LOC101348396	A0A2Y9DKS3	A0A2Y9D906	Syntaxin-8.	Syntaxin-16 isoform X1; Belongs to the syntaxin family.	0.928
LOC101343174	LOC101352194	A0A2Y9DKS3	A0A2Y9DKX8	Syntaxin-8.	Beta-soluble NSF attachment protein isoform X1.	0.776
LOC101343174	LOC101352241	A0A2Y9DKS3	A0A2Y9EAV8	Syntaxin-8.	Syntaxin-10; Belongs to the syntaxin family.	0.693