5 items (Trichechus manatus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC101348224	Vacuolar protein sorting-associated protein 54 isoform X1. (978 aa)
	LOC101343455	Vacuolar protein sorting-associated protein 51 homolog. (782 aa)
	LOC101350432	Vacuolar protein sorting-associated protein 52 homolog isoform X3. (727 aa)
	LOC101350386	Vacuolar protein sorting-associated protein 53 homolog isoform X1. (594 aa)
	LOC111820509	Vacuolar protein sorting-associated protein 53 homolog. (128 aa)

Your Current Organism:

Trichechus manatus

NCBI taxonomy Id: 127582
Other names: Florida manatee, T. manatus latirostris, Trichechus manatus latirostris

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC101343455	LOC101348224	A0A2Y9DYU6	A0A2Y9D7I8	Vacuolar protein sorting-associated protein 51 homolog.	Vacuolar protein sorting-associated protein 54 isoform X1.	0.986
LOC101343455	LOC101350386	A0A2Y9DYU6	A0A2Y9R0D7	Vacuolar protein sorting-associated protein 51 homolog.	Vacuolar protein sorting-associated protein 53 homolog isoform X1.	0.970
LOC101343455	LOC101350432	A0A2Y9DYU6	A0A2Y9QBM6	Vacuolar protein sorting-associated protein 51 homolog.	Vacuolar protein sorting-associated protein 52 homolog isoform X3.	0.993
LOC101343455	LOC111820509	A0A2Y9DYU6	A0A2Y9R5V4	Vacuolar protein sorting-associated protein 51 homolog.	Vacuolar protein sorting-associated protein 53 homolog.	0.970
LOC101348224	LOC101343455	A0A2Y9D7I8	A0A2Y9DYU6	Vacuolar protein sorting-associated protein 54 isoform X1.	Vacuolar protein sorting-associated protein 51 homolog.	0.986
LOC101348224	LOC101350386	A0A2Y9D7I8	A0A2Y9R0D7	Vacuolar protein sorting-associated protein 54 isoform X1.	Vacuolar protein sorting-associated protein 53 homolog isoform X1.	0.971
LOC101348224	LOC101350432	A0A2Y9D7I8	A0A2Y9QBM6	Vacuolar protein sorting-associated protein 54 isoform X1.	Vacuolar protein sorting-associated protein 52 homolog isoform X3.	0.998
LOC101348224	LOC111820509	A0A2Y9D7I8	A0A2Y9R5V4	Vacuolar protein sorting-associated protein 54 isoform X1.	Vacuolar protein sorting-associated protein 53 homolog.	0.971
LOC101350386	LOC101343455	A0A2Y9R0D7	A0A2Y9DYU6	Vacuolar protein sorting-associated protein 53 homolog isoform X1.	Vacuolar protein sorting-associated protein 51 homolog.	0.970
LOC101350386	LOC101348224	A0A2Y9R0D7	A0A2Y9D7I8	Vacuolar protein sorting-associated protein 53 homolog isoform X1.	Vacuolar protein sorting-associated protein 54 isoform X1.	0.971
LOC101350386	LOC101350432	A0A2Y9R0D7	A0A2Y9QBM6	Vacuolar protein sorting-associated protein 53 homolog isoform X1.	Vacuolar protein sorting-associated protein 52 homolog isoform X3.	0.958
LOC101350386	LOC111820509	A0A2Y9R0D7	A0A2Y9R5V4	Vacuolar protein sorting-associated protein 53 homolog isoform X1.	Vacuolar protein sorting-associated protein 53 homolog.	0.950
LOC101350432	LOC101343455	A0A2Y9QBM6	A0A2Y9DYU6	Vacuolar protein sorting-associated protein 52 homolog isoform X3.	Vacuolar protein sorting-associated protein 51 homolog.	0.993
LOC101350432	LOC101348224	A0A2Y9QBM6	A0A2Y9D7I8	Vacuolar protein sorting-associated protein 52 homolog isoform X3.	Vacuolar protein sorting-associated protein 54 isoform X1.	0.998
LOC101350432	LOC101350386	A0A2Y9QBM6	A0A2Y9R0D7	Vacuolar protein sorting-associated protein 52 homolog isoform X3.	Vacuolar protein sorting-associated protein 53 homolog isoform X1.	0.958
LOC101350432	LOC111820509	A0A2Y9QBM6	A0A2Y9R5V4	Vacuolar protein sorting-associated protein 52 homolog isoform X3.	Vacuolar protein sorting-associated protein 53 homolog.	0.958
LOC111820509	LOC101343455	A0A2Y9R5V4	A0A2Y9DYU6	Vacuolar protein sorting-associated protein 53 homolog.	Vacuolar protein sorting-associated protein 51 homolog.	0.970
LOC111820509	LOC101348224	A0A2Y9R5V4	A0A2Y9D7I8	Vacuolar protein sorting-associated protein 53 homolog.	Vacuolar protein sorting-associated protein 54 isoform X1.	0.971
LOC111820509	LOC101350386	A0A2Y9R5V4	A0A2Y9R0D7	Vacuolar protein sorting-associated protein 53 homolog.	Vacuolar protein sorting-associated protein 53 homolog isoform X1.	0.950
LOC111820509	LOC101350432	A0A2Y9R5V4	A0A2Y9QBM6	Vacuolar protein sorting-associated protein 53 homolog.	Vacuolar protein sorting-associated protein 52 homolog isoform X3.	0.958