(5 nodes) Nuclear pore outer ring network (Trichechus manatus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC101353092	Protein SEC13 homolog; Belongs to the WD repeat SEC13 family. (322 aa)
	LOC101344892	Nuclear pore complex protein Nup133 isoform X1. (1156 aa)
	LOC101348897	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC). (958 aa)
	LOC101344349	Nucleoporin SEH1 isoform X2; Belongs to the WD repeat SEC13 family. (421 aa)
	LOC101353303	Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC). (589 aa)

Your Current Organism:

Trichechus manatus

NCBI taxonomy Id: 127582
Other names: Florida manatee, T. manatus latirostris, Trichechus manatus latirostris

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC101344349	LOC101344892	A0A2Y9E9Q9	A0A2Y9DZ75	Nucleoporin SEH1 isoform X2; Belongs to the WD repeat SEC13 family.	Nuclear pore complex protein Nup133 isoform X1.	0.999
LOC101344349	LOC101348897	A0A2Y9E9Q9	A0A2Y9E5B7	Nucleoporin SEH1 isoform X2; Belongs to the WD repeat SEC13 family.	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).	0.999
LOC101344349	LOC101353092	A0A2Y9E9Q9	A0A2Y9D5W7	Nucleoporin SEH1 isoform X2; Belongs to the WD repeat SEC13 family.	Protein SEC13 homolog; Belongs to the WD repeat SEC13 family.	0.999
LOC101344349	LOC101353303	A0A2Y9E9Q9	A0A2Y9R0R9	Nucleoporin SEH1 isoform X2; Belongs to the WD repeat SEC13 family.	Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC).	0.999
LOC101344892	LOC101344349	A0A2Y9DZ75	A0A2Y9E9Q9	Nuclear pore complex protein Nup133 isoform X1.	Nucleoporin SEH1 isoform X2; Belongs to the WD repeat SEC13 family.	0.999
LOC101344892	LOC101348897	A0A2Y9DZ75	A0A2Y9E5B7	Nuclear pore complex protein Nup133 isoform X1.	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).	0.999
LOC101344892	LOC101353092	A0A2Y9DZ75	A0A2Y9D5W7	Nuclear pore complex protein Nup133 isoform X1.	Protein SEC13 homolog; Belongs to the WD repeat SEC13 family.	0.999
LOC101344892	LOC101353303	A0A2Y9DZ75	A0A2Y9R0R9	Nuclear pore complex protein Nup133 isoform X1.	Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC).	0.999
LOC101348897	LOC101344349	A0A2Y9E5B7	A0A2Y9E9Q9	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).	Nucleoporin SEH1 isoform X2; Belongs to the WD repeat SEC13 family.	0.999
LOC101348897	LOC101344892	A0A2Y9E5B7	A0A2Y9DZ75	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).	Nuclear pore complex protein Nup133 isoform X1.	0.999
LOC101348897	LOC101353092	A0A2Y9E5B7	A0A2Y9D5W7	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).	Protein SEC13 homolog; Belongs to the WD repeat SEC13 family.	0.999
LOC101348897	LOC101353303	A0A2Y9E5B7	A0A2Y9R0R9	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).	Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC).	0.999
LOC101353092	LOC101344349	A0A2Y9D5W7	A0A2Y9E9Q9	Protein SEC13 homolog; Belongs to the WD repeat SEC13 family.	Nucleoporin SEH1 isoform X2; Belongs to the WD repeat SEC13 family.	0.999
LOC101353092	LOC101344892	A0A2Y9D5W7	A0A2Y9DZ75	Protein SEC13 homolog; Belongs to the WD repeat SEC13 family.	Nuclear pore complex protein Nup133 isoform X1.	0.999
LOC101353092	LOC101348897	A0A2Y9D5W7	A0A2Y9E5B7	Protein SEC13 homolog; Belongs to the WD repeat SEC13 family.	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).	0.999
LOC101353092	LOC101353303	A0A2Y9D5W7	A0A2Y9R0R9	Protein SEC13 homolog; Belongs to the WD repeat SEC13 family.	Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC).	0.999
LOC101353303	LOC101344349	A0A2Y9R0R9	A0A2Y9E9Q9	Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC).	Nucleoporin SEH1 isoform X2; Belongs to the WD repeat SEC13 family.	0.999
LOC101353303	LOC101344892	A0A2Y9R0R9	A0A2Y9DZ75	Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC).	Nuclear pore complex protein Nup133 isoform X1.	0.999
LOC101353303	LOC101348897	A0A2Y9R0R9	A0A2Y9E5B7	Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC).	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).	0.999
LOC101353303	LOC101353092	A0A2Y9R0R9	A0A2Y9D5W7	Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC).	Protein SEC13 homolog; Belongs to the WD repeat SEC13 family.	0.999