15 items (Trichechus manatus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC101351461	Double-strand-break repair protein rad21-like protein 1. (555 aa)
	LOC101361502	Double-strand-break repair protein rad21 homolog. (631 aa)
	LOC101342486	Structural maintenance of chromosomes protein. (1217 aa)
	LOC101347853	Structural maintenance of chromosomes protein. (1234 aa)
	LOC101359046	MAU2 chromatid cohesion factor homolog isoform X1. (612 aa)
	LOC101344252	Nipped-B protein. (2803 aa)
	LOC101359509	Structural maintenance of chromosomes protein. (1233 aa)
	LOC101342190	Sororin. (251 aa)
	LOC101355069	Meiotic recombination protein REC8 homolog. (567 aa)
	LOC101346585	Cohesin subunit SA-2 isoform X1. (1268 aa)
	LOC101340734	Cohesin subunit SA-1 isoform X1. (1325 aa)
	LOC101342033	Wings apart-like protein homolog isoform X1. (1196 aa)
	LOC101360794	Cohesin subunit SA-3. (1224 aa)
	LOC101349055	Sister chromatid cohesion protein PDS5 homolog B isoform X1. (1456 aa)
	LOC101354863	Sister chromatid cohesion protein PDS5 homolog A isoform X1. (1352 aa)

Your Current Organism:

Trichechus manatus

NCBI taxonomy Id: 127582
Other names: Florida manatee, T. manatus latirostris, Trichechus manatus latirostris

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC101340734	LOC101342033	A0A2Y9R8N8	A0A2Y9RM06	Cohesin subunit SA-1 isoform X1.	Wings apart-like protein homolog isoform X1.	0.942
LOC101340734	LOC101342190	A0A2Y9R8N8	A0A2Y9G319	Cohesin subunit SA-1 isoform X1.	Sororin.	0.780
LOC101340734	LOC101342486	A0A2Y9R8N8	A0A2Y9DHS0	Cohesin subunit SA-1 isoform X1.	Structural maintenance of chromosomes protein.	0.998
LOC101340734	LOC101344252	A0A2Y9R8N8	A0A2Y9E7K2	Cohesin subunit SA-1 isoform X1.	Nipped-B protein.	0.913
LOC101340734	LOC101346585	A0A2Y9R8N8	A0A2Y9R3F9	Cohesin subunit SA-1 isoform X1.	Cohesin subunit SA-2 isoform X1.	0.991
LOC101340734	LOC101347853	A0A2Y9R8N8	A0A2Y9DT16	Cohesin subunit SA-1 isoform X1.	Structural maintenance of chromosomes protein.	0.982
LOC101340734	LOC101349055	A0A2Y9R8N8	A0A2Y9RR11	Cohesin subunit SA-1 isoform X1.	Sister chromatid cohesion protein PDS5 homolog B isoform X1.	0.898
LOC101340734	LOC101351461	A0A2Y9R8N8	A0A2Y9D9R9	Cohesin subunit SA-1 isoform X1.	Double-strand-break repair protein rad21-like protein 1.	0.898
LOC101340734	LOC101354863	A0A2Y9R8N8	A0A2Y9RRZ8	Cohesin subunit SA-1 isoform X1.	Sister chromatid cohesion protein PDS5 homolog A isoform X1.	0.931
LOC101340734	LOC101355069	A0A2Y9R8N8	A0A2Y9G470	Cohesin subunit SA-1 isoform X1.	Meiotic recombination protein REC8 homolog.	0.899
LOC101340734	LOC101359046	A0A2Y9R8N8	A0A2Y9E1H9	Cohesin subunit SA-1 isoform X1.	MAU2 chromatid cohesion factor homolog isoform X1.	0.672
LOC101340734	LOC101359509	A0A2Y9R8N8	A0A2Y9E8X5	Cohesin subunit SA-1 isoform X1.	Structural maintenance of chromosomes protein.	0.997
LOC101340734	LOC101360794	A0A2Y9R8N8	A0A2Y9RQE6	Cohesin subunit SA-1 isoform X1.	Cohesin subunit SA-3.	0.604
LOC101340734	LOC101361502	A0A2Y9R8N8	A0A2Y9DE68	Cohesin subunit SA-1 isoform X1.	Double-strand-break repair protein rad21 homolog.	0.978
LOC101342033	LOC101340734	A0A2Y9RM06	A0A2Y9R8N8	Wings apart-like protein homolog isoform X1.	Cohesin subunit SA-1 isoform X1.	0.942
LOC101342033	LOC101342190	A0A2Y9RM06	A0A2Y9G319	Wings apart-like protein homolog isoform X1.	Sororin.	0.907
LOC101342033	LOC101342486	A0A2Y9RM06	A0A2Y9DHS0	Wings apart-like protein homolog isoform X1.	Structural maintenance of chromosomes protein.	0.964
LOC101342033	LOC101344252	A0A2Y9RM06	A0A2Y9E7K2	Wings apart-like protein homolog isoform X1.	Nipped-B protein.	0.922
LOC101342033	LOC101346585	A0A2Y9RM06	A0A2Y9R3F9	Wings apart-like protein homolog isoform X1.	Cohesin subunit SA-2 isoform X1.	0.933
LOC101342033	LOC101347853	A0A2Y9RM06	A0A2Y9DT16	Wings apart-like protein homolog isoform X1.	Structural maintenance of chromosomes protein.	0.807