29 items (Trichechus manatus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC101361479	RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires the tRNA- binding adapter protein THUMPD1 for full tRNA acetyltransferase activity but not for 18S rRNA acetylation. (1026 aa)
	LOC101358979	Protein RRP5 homolog. (1872 aa)
	LOC101347815	DDB1- and CUL4-associated factor 13. (445 aa)
	LOC101353879	rRNA-processing protein FCF1 homolog. (198 aa)
	LOC101348659	U3 small nucleolar RNA-associated protein 4 homolog isoform X1. (686 aa)
	LOC101359694	U3 small nucleolar RNA-associated protein 11; Involved in nucleolar processing of pre-18S ribosomal RNA. (253 aa)
	LOC101340891	Nucleolar protein 6. (1141 aa)
	LOC101349180	U3 small nucleolar ribonucleoprotein protein MPP10; Component of the 60-80S U3 small nucleolar ribonucleoprotein (U3 snoRNP). Required for the early cleavages during pre-18S ribosomal RNA processing; Belongs to the MPP10 family. (676 aa)
	LOC101356292	HEAT repeat-containing protein 1 isoform X1. (2142 aa)
	LOC101359442	RNA 3'-terminal phosphate cyclase-like protein isoform X1. (373 aa)
	LOC101340627	U3 small nucleolar RNA-associated protein 15 homolog. (518 aa)
	LOC101343508	WD repeat-containing protein 36. (895 aa)
	LOC101345974	WD repeat-containing protein 43. (679 aa)
	LOC101347843	U3 small nucleolar RNA-associated protein 18 homolog. (555 aa)
	LOC101348098	Nucleolar protein 58 isoform X1. (533 aa)
	LOC101342175	Ribosomal RNA-processing protein 7 homolog A. (279 aa)
	LOC101359637	WD repeat-containing protein 3. (943 aa)
	LOC101346159	Nucleolar protein 14. (854 aa)
	LOC101340741	Something about silencing protein 10. (478 aa)
	LOC101346003	Nucleolar complex protein 4 homolog. (516 aa)
	LOC101345741	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly. (381 aa)
	LOC101342529	U3 small nucleolar RNA-associated protein 6 homolog. (598 aa)
	LOC101354611	WD repeat-containing protein 75 isoform X1. (830 aa)
	LOC101358623	Ribosomal RNA small subunit methyltransferase NEP1. (244 aa)
	LOC101352332	Ribosome biogenesis protein BMS1 homolog. (1287 aa)
	LOC101358916	Small subunit processome component 20 homolog isoform X1. (2807 aa)
	LOC101351125	WD repeat-containing protein 46 isoform X1. (625 aa)
	LOC101348159	Transducin beta-like protein 3. (831 aa)
	LOC101346595	Periodic tryptophan protein 2 homolog. (650 aa)

Your Current Organism:

Trichechus manatus

NCBI taxonomy Id: 127582
Other names: Florida manatee, T. manatus latirostris, Trichechus manatus latirostris

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC101340627	LOC101340741	A0A2Y9DH78	A0A2Y9DZ79	U3 small nucleolar RNA-associated protein 15 homolog.	Something about silencing protein 10.	0.977
LOC101340627	LOC101340891	A0A2Y9DH78	A0A2Y9DD55	U3 small nucleolar RNA-associated protein 15 homolog.	Nucleolar protein 6.	0.990
LOC101340627	LOC101342175	A0A2Y9DH78	A0A2Y9DRX0	U3 small nucleolar RNA-associated protein 15 homolog.	Ribosomal RNA-processing protein 7 homolog A.	0.975
LOC101340627	LOC101342529	A0A2Y9DH78	A0A2Y9E221	U3 small nucleolar RNA-associated protein 15 homolog.	U3 small nucleolar RNA-associated protein 6 homolog.	0.998
LOC101340627	LOC101343508	A0A2Y9DH78	A0A2Y9DLW9	U3 small nucleolar RNA-associated protein 15 homolog.	WD repeat-containing protein 36.	0.999
LOC101340627	LOC101345741	A0A2Y9DH78	A0A2Y9E1M1	U3 small nucleolar RNA-associated protein 15 homolog.	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.	0.993
LOC101340627	LOC101345974	A0A2Y9DH78	A0A2Y9DND0	U3 small nucleolar RNA-associated protein 15 homolog.	WD repeat-containing protein 43.	0.999
LOC101340627	LOC101346003	A0A2Y9DH78	A0A2Y9E1C9	U3 small nucleolar RNA-associated protein 15 homolog.	Nucleolar complex protein 4 homolog.	0.997
LOC101340627	LOC101346159	A0A2Y9DH78	A0A2Y9DY52	U3 small nucleolar RNA-associated protein 15 homolog.	Nucleolar protein 14.	0.977
LOC101340627	LOC101346595	A0A2Y9DH78	A0A2Y9RTA3	U3 small nucleolar RNA-associated protein 15 homolog.	Periodic tryptophan protein 2 homolog.	0.998
LOC101340627	LOC101347815	A0A2Y9DH78	A0A2Y9D9X6	U3 small nucleolar RNA-associated protein 15 homolog.	DDB1- and CUL4-associated factor 13.	0.988
LOC101340627	LOC101347843	A0A2Y9DH78	A0A2Y9DNV2	U3 small nucleolar RNA-associated protein 15 homolog.	U3 small nucleolar RNA-associated protein 18 homolog.	0.999
LOC101340627	LOC101348098	A0A2Y9DH78	A0A2Y9DQD6	U3 small nucleolar RNA-associated protein 15 homolog.	Nucleolar protein 58 isoform X1.	0.998
LOC101340627	LOC101348159	A0A2Y9DH78	A0A2Y9QY71	U3 small nucleolar RNA-associated protein 15 homolog.	Transducin beta-like protein 3.	0.997
LOC101340627	LOC101348659	A0A2Y9DH78	A0A2Y9DBG7	U3 small nucleolar RNA-associated protein 15 homolog.	U3 small nucleolar RNA-associated protein 4 homolog isoform X1.	0.999
LOC101340627	LOC101349180	A0A2Y9DH78	A0A2Y9DDP5	U3 small nucleolar RNA-associated protein 15 homolog.	U3 small nucleolar ribonucleoprotein protein MPP10; Component of the 60-80S U3 small nucleolar ribonucleoprotein (U3 snoRNP). Required for the early cleavages during pre-18S ribosomal RNA processing; Belongs to the MPP10 family.	0.996
LOC101340627	LOC101351125	A0A2Y9DH78	A0A2Y9QMY0	U3 small nucleolar RNA-associated protein 15 homolog.	WD repeat-containing protein 46 isoform X1.	0.998
LOC101340627	LOC101352332	A0A2Y9DH78	A0A2Y9QFY7	U3 small nucleolar RNA-associated protein 15 homolog.	Ribosome biogenesis protein BMS1 homolog.	0.997
LOC101340627	LOC101353879	A0A2Y9DH78	A0A2Y9DB72	U3 small nucleolar RNA-associated protein 15 homolog.	rRNA-processing protein FCF1 homolog.	0.974
LOC101340627	LOC101354611	A0A2Y9DH78	A0A2Y9E2F0	U3 small nucleolar RNA-associated protein 15 homolog.	WD repeat-containing protein 75 isoform X1.	0.999