STRINGSTRING
LOC101346313 LOC101346313 LOC101349428 LOC101349428 LOC101341137 LOC101341137 LOC101361405 LOC101361405 LOC101342424 LOC101342424 LOC101354098 LOC101354098 LOC101355402 LOC101355402 LOC101359583 LOC101359583 LOC101342529 LOC101342529 LOC101354288 LOC101354288 LOC101348793 LOC101348793 LOC101356986 LOC101356986 LOC101340741 LOC101340741 LOC101346159 LOC101346159 LOC101359637 LOC101359637 LOC101355631 LOC101355631 LOC101358429 LOC101358429 LOC101346595 LOC101346595 LOC101361106 LOC101361106 LOC101351422 LOC101351422 LOC101348436 LOC101348436 LOC101355441 LOC101355441 LOC101345974 LOC101345974 LOC101360321 LOC101360321 LOC101355092 LOC101355092 LOC101348080 LOC101348080 LOC101361249 LOC101361249 LOC101356190 LOC101356190 LOC111822755 LOC111822755 LOC101356292 LOC101356292 LOC101350192 LOC101350192 LOC101348659 LOC101348659 LOC101359149 LOC101359149 LOC101351125 LOC101351125 LOC101352332 LOC101352332 LOC101344456 LOC101344456 LOC101347815 LOC101347815 LOC101347314 LOC101347314 LOC101346188 LOC101346188 LOC101361479 LOC101361479 LOC101356092 LOC101356092 LOC101352186 LOC101352186 LOC101348159 LOC101348159 LOC101360484 LOC101360484 LOC101351941 LOC101351941
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
LOC101346313Probable ATP-dependent RNA helicase DDX52 isoform X1. (613 aa)
LOC101349428Nucleolar protein 9. (635 aa)
LOC101341137Neuroguidin. (315 aa)
LOC101361405pre-rRNA-processing protein TSR2 homolog isoform X1. (191 aa)
LOC101342424DNA helicase B isoform X1. (1076 aa)
LOC101354098TFIIH basal transcription factor complex helicase XPD subunit. (736 aa)
LOC101355402Serine/threonine-protein kinase RIO1; Belongs to the protein kinase superfamily. RIO-type Ser/Thr kinase family. (563 aa)
LOC101359583Ribonuclease P protein subunit p40 isoform X1. (363 aa)
LOC101342529U3 small nucleolar RNA-associated protein 6 homolog. (598 aa)
LOC101354288Probable ATP-dependent RNA helicase DHX37. (1159 aa)
LOC101348793Protein FAM207A isoform X1. (219 aa)
LOC101356986Activator of basal transcription 1. (266 aa)
LOC101340741Something about silencing protein 10. (478 aa)
LOC101346159Nucleolar protein 14. (854 aa)
LOC101359637WD repeat-containing protein 3. (943 aa)
LOC101355631Serum response factor-binding protein 1 isoform X1. (428 aa)
LOC10135842940S ribosomal protein S14; Belongs to the universal ribosomal protein uS11 family. (151 aa)
LOC101346595Periodic tryptophan protein 2 homolog. (650 aa)
LOC101361106Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family. (128 aa)
LOC101351422Bystin. (437 aa)
LOC10134843640S ribosomal protein S28. (69 aa)
LOC101355441Protein KRI1 homolog. (703 aa)
LOC101345974WD repeat-containing protein 43. (679 aa)
LOC101360321pre-rRNA-processing protein TSR1 homolog isoform X1. (804 aa)
LOC101355092Serine/threonine-protein kinase RIO2. (552 aa)
LOC101348080Nucleolar protein 10 isoform X1. (687 aa)
LOC101361249rRNA-processing protein UTP23 homolog. (249 aa)
LOC10135619040S ribosomal protein S8; Belongs to the eukaryotic ribosomal protein eS8 family. (208 aa)
LOC11182275540S ribosomal protein S16. (86 aa)
LOC101356292HEAT repeat-containing protein 1 isoform X1. (2142 aa)
LOC101350192Nucleolar protein 11 isoform X1. (752 aa)
LOC101348659U3 small nucleolar RNA-associated protein 4 homolog isoform X1. (686 aa)
LOC101359149Serine/threonine-protein kinase RIO3; Involved in regulation of type I interferon (IFN)-dependent immune response which plays a critical role in the innate immune response against DNA and RNA viruses. (514 aa)
LOC101351125WD repeat-containing protein 46 isoform X1. (625 aa)
LOC101352332Ribosome biogenesis protein BMS1 homolog. (1287 aa)
LOC101344456Ribosome biogenesis regulatory protein; Involved in ribosomal large subunit assembly. Belongs to the RRS1 family. (365 aa)
LOC101347815DDB1- and CUL4-associated factor 13. (445 aa)
LOC10134731428S ribosomal protein S11, mitochondrial; Belongs to the universal ribosomal protein uS11 family. (194 aa)
LOC10134618840S ribosomal protein S21; Belongs to the eukaryotic ribosomal protein eS21 family. (83 aa)
LOC101361479RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires the tRNA- binding adapter protein THUMPD1 for full tRNA acetyltransferase activity but not for 18S rRNA acetylation. (1026 aa)
LOC101356092LOW QUALITY PROTEIN: 40S ribosomal protein S16. (146 aa)
LOC101352186Probable ribosome biogenesis protein C16orf42 homolog; Probable pre-rRNA processing protein involved in ribosome biogenesis. (352 aa)
LOC101348159Transducin beta-like protein 3. (831 aa)
LOC101360484Digestive organ expansion factor homolog isoform X1. (802 aa)
LOC101351941U6 snRNA-associated Sm-like protein LSm6. (80 aa)
Your Current Organism:
Trichechus manatus
NCBI taxonomy Id: 127582
Other names: Florida manatee, T. manatus latirostris, Trichechus manatus latirostris
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