40 items (Trichechus manatus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC101348807	U3 small nucleolar RNA-interacting protein 2. (518 aa)
	LOC101357166	rRNA 2'-O-methyltransferase fibrillarin. (317 aa)
	LOC101355509	40S ribosomal protein S7; Belongs to the eukaryotic ribosomal protein eS7 family. (194 aa)
	LOC101356292	HEAT repeat-containing protein 1 isoform X1. (2142 aa)
	LOC101349180	U3 small nucleolar ribonucleoprotein protein MPP10; Component of the 60-80S U3 small nucleolar ribonucleoprotein (U3 snoRNP). Required for the early cleavages during pre-18S ribosomal RNA processing; Belongs to the MPP10 family. (676 aa)
	LOC101340891	Nucleolar protein 6. (1141 aa)
	LOC101359694	U3 small nucleolar RNA-associated protein 11; Involved in nucleolar processing of pre-18S ribosomal RNA. (253 aa)
	LOC101359170	rRNA/tRNA 2'-O-methyltransferase fibrillarin-like protein 1. (325 aa)
	LOC101348659	U3 small nucleolar RNA-associated protein 4 homolog isoform X1. (686 aa)
	LOC101353879	rRNA-processing protein FCF1 homolog. (198 aa)
	LOC101346595	Periodic tryptophan protein 2 homolog. (650 aa)
	LOC101358979	Protein RRP5 homolog. (1872 aa)
	LOC101347815	DDB1- and CUL4-associated factor 13. (445 aa)
	LOC101347843	U3 small nucleolar RNA-associated protein 18 homolog. (555 aa)
	LOC101343508	WD repeat-containing protein 36. (895 aa)
	LOC101361517	X-ray repair cross-complementing protein 5 isoform X1. (742 aa)
	LOC101346733	DNA-dependent protein kinase catalytic subunit isoform X1; Belongs to the PI3/PI4-kinase family. (4134 aa)
	LOC101340701	U3 small nucleolar ribonucleoprotein protein IMP3. (233 aa)
	LOC101348080	Nucleolar protein 10 isoform X1. (687 aa)
	LOC101361249	rRNA-processing protein UTP23 homolog. (249 aa)
	LOC101348098	Nucleolar protein 58 isoform X1. (533 aa)
	LOC101361106	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family. (128 aa)
	LOC101359637	WD repeat-containing protein 3. (943 aa)
	LOC101346159	Nucleolar protein 14. (854 aa)
	LOC101340741	Something about silencing protein 10. (478 aa)
	LOC101346003	Nucleolar complex protein 4 homolog. (516 aa)
	LOC101345741	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly. (381 aa)
	LOC101342529	U3 small nucleolar RNA-associated protein 6 homolog. (598 aa)
	LOC101358623	Ribosomal RNA small subunit methyltransferase NEP1. (244 aa)
	LOC101354123	U3 small nucleolar ribonucleoprotein protein IMP4. (291 aa)
	LOC101341137	Neuroguidin. (315 aa)
	LOC101351423	U3 small nucleolar RNA-associated protein 14 homolog A. (781 aa)
	LOC101358620	Hormonally up-regulated neu tumor-associated kinase. (709 aa)
	LOC101358916	Small subunit processome component 20 homolog isoform X1. (2807 aa)
	LOC101351125	WD repeat-containing protein 46 isoform X1. (625 aa)
	LOC111819696	U3 small nucleolar ribonucleoprotein protein IMP4-like. (209 aa)
	LOC101348159	Transducin beta-like protein 3. (831 aa)
	LOC101360484	Digestive organ expansion factor homolog isoform X1. (802 aa)
	LOC101340740	Nucleolar protein 56 isoform X1. (613 aa)
	LOC101351261	U3 small nucleolar RNA-associated protein 14 homolog A-like isoform X1. (766 aa)

Your Current Organism:

Trichechus manatus

NCBI taxonomy Id: 127582
Other names: Florida manatee, T. manatus latirostris, Trichechus manatus latirostris

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC101340701	LOC101340740	A0A2Y9DHN6	A0A2Y9RFV3	U3 small nucleolar ribonucleoprotein protein IMP3.	Nucleolar protein 56 isoform X1.	0.961
LOC101340701	LOC101340741	A0A2Y9DHN6	A0A2Y9DZ79	U3 small nucleolar ribonucleoprotein protein IMP3.	Something about silencing protein 10.	0.996
LOC101340701	LOC101340891	A0A2Y9DHN6	A0A2Y9DD55	U3 small nucleolar ribonucleoprotein protein IMP3.	Nucleolar protein 6.	0.989
LOC101340701	LOC101341137	A0A2Y9DHN6	A0A2Y9EBB5	U3 small nucleolar ribonucleoprotein protein IMP3.	Neuroguidin.	0.987
LOC101340701	LOC101342529	A0A2Y9DHN6	A0A2Y9E221	U3 small nucleolar ribonucleoprotein protein IMP3.	U3 small nucleolar RNA-associated protein 6 homolog.	0.992
LOC101340701	LOC101343508	A0A2Y9DHN6	A0A2Y9DLW9	U3 small nucleolar ribonucleoprotein protein IMP3.	WD repeat-containing protein 36.	0.984
LOC101340701	LOC101345741	A0A2Y9DHN6	A0A2Y9E1M1	U3 small nucleolar ribonucleoprotein protein IMP3.	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.	0.997
LOC101340701	LOC101346003	A0A2Y9DHN6	A0A2Y9E1C9	U3 small nucleolar ribonucleoprotein protein IMP3.	Nucleolar complex protein 4 homolog.	0.971
LOC101340701	LOC101346159	A0A2Y9DHN6	A0A2Y9DY52	U3 small nucleolar ribonucleoprotein protein IMP3.	Nucleolar protein 14.	0.964
LOC101340701	LOC101346595	A0A2Y9DHN6	A0A2Y9RTA3	U3 small nucleolar ribonucleoprotein protein IMP3.	Periodic tryptophan protein 2 homolog.	0.993
LOC101340701	LOC101347815	A0A2Y9DHN6	A0A2Y9D9X6	U3 small nucleolar ribonucleoprotein protein IMP3.	DDB1- and CUL4-associated factor 13.	0.973
LOC101340701	LOC101347843	A0A2Y9DHN6	A0A2Y9DNV2	U3 small nucleolar ribonucleoprotein protein IMP3.	U3 small nucleolar RNA-associated protein 18 homolog.	0.991
LOC101340701	LOC101348080	A0A2Y9DHN6	A0A2Y9DFC3	U3 small nucleolar ribonucleoprotein protein IMP3.	Nucleolar protein 10 isoform X1.	0.930
LOC101340701	LOC101348098	A0A2Y9DHN6	A0A2Y9DQD6	U3 small nucleolar ribonucleoprotein protein IMP3.	Nucleolar protein 58 isoform X1.	0.990
LOC101340701	LOC101348159	A0A2Y9DHN6	A0A2Y9QY71	U3 small nucleolar ribonucleoprotein protein IMP3.	Transducin beta-like protein 3.	0.980
LOC101340701	LOC101348659	A0A2Y9DHN6	A0A2Y9DBG7	U3 small nucleolar ribonucleoprotein protein IMP3.	U3 small nucleolar RNA-associated protein 4 homolog isoform X1.	0.975
LOC101340701	LOC101348807	A0A2Y9DHN6	A0A2Y9D6F5	U3 small nucleolar ribonucleoprotein protein IMP3.	U3 small nucleolar RNA-interacting protein 2.	0.988
LOC101340701	LOC101349180	A0A2Y9DHN6	A0A2Y9DDP5	U3 small nucleolar ribonucleoprotein protein IMP3.	U3 small nucleolar ribonucleoprotein protein MPP10; Component of the 60-80S U3 small nucleolar ribonucleoprotein (U3 snoRNP). Required for the early cleavages during pre-18S ribosomal RNA processing; Belongs to the MPP10 family.	0.997
LOC101340701	LOC101351125	A0A2Y9DHN6	A0A2Y9QMY0	U3 small nucleolar ribonucleoprotein protein IMP3.	WD repeat-containing protein 46 isoform X1.	0.988
LOC101340701	LOC101351261	A0A2Y9DHN6	A0A2Y9RHP1	U3 small nucleolar ribonucleoprotein protein IMP3.	U3 small nucleolar RNA-associated protein 14 homolog A-like isoform X1.	0.922