20 items (Trichechus manatus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC101359038	Coiled-coil domain-containing protein 114. (704 aa)
	LOC101347010	Protein PIH1D3. (214 aa)
	LOC101348861	Coiled-coil domain-containing protein 151 isoform X1. (597 aa)
	LOC101342249	Dynein assembly factor 1, axonemal. (642 aa)
	LOC101345875	Coiled-coil domain-containing protein 103. (250 aa)
	LOC101358135	Dynein intermediate chain 2, axonemal. (744 aa)
	LOC101360738	Dynein intermediate chain 1, axonemal. (764 aa)
	LOC101357871	Uncharacterized protein C16orf71 homolog. (521 aa)
	LOC101361589	Protein tilB homolog. (353 aa)
	LOC101354146	Dynein light chain 1, axonemal. (111 aa)
	LOC101353919	LOW QUALITY PROTEIN: dynein heavy chain 8, axonemal. (3860 aa)
	LOC101345965	EF-hand calcium-binding domain-containing protein 1. (213 aa)
	LOC101343989	Zinc finger MYND domain-containing protein 10; Plays a role in axonemal structure organization and motility. Involved in axonemal pre-assembly of inner and outer dynein arms (IDA and ODA, respectively) for proper axoneme building for cilia motility. May act by indirectly regulating transcription of dynein proteins. Belongs to the ZMYND10 family. (440 aa)
	LOC101345511	Protein kintoun; Required for cytoplasmic pre-assembly of axonemal dyneins, thereby playing a central role in motility in cilia and flagella. Involved in pre-assembly of dynein arm complexes in the cytoplasm before intraflagellar transport loads them for the ciliary compartment. (891 aa)
	LOC101355410	Tetratricopeptide repeat protein 25. (654 aa)
	LOC101351959	Dynein heavy chain 5, axonemal. (4624 aa)
	LOC101346059	Coiled-coil domain-containing protein 63. (570 aa)
	LOC101353533	EF-hand calcium-binding domain-containing protein 1-like. (203 aa)
	LOC101341685	Armadillo repeat-containing protein 4. (1041 aa)
	LOC101356152	Dynein assembly factor 5, axonemal. (751 aa)

Your Current Organism:

Trichechus manatus

NCBI taxonomy Id: 127582
Other names: Florida manatee, T. manatus latirostris, Trichechus manatus latirostris

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC101341685	LOC101343989	A0A2Y9E350	A0A2Y9D6A1	Armadillo repeat-containing protein 4.	Zinc finger MYND domain-containing protein 10; Plays a role in axonemal structure organization and motility. Involved in axonemal pre-assembly of inner and outer dynein arms (IDA and ODA, respectively) for proper axoneme building for cilia motility. May act by indirectly regulating transcription of dynein proteins. Belongs to the ZMYND10 family.	0.634
LOC101341685	LOC101345875	A0A2Y9E350	A0A2Y9DHC7	Armadillo repeat-containing protein 4.	Coiled-coil domain-containing protein 103.	0.403
LOC101341685	LOC101345965	A0A2Y9E350	A0A2Y9R480	Armadillo repeat-containing protein 4.	EF-hand calcium-binding domain-containing protein 1.	0.756
LOC101341685	LOC101346059	A0A2Y9E350	A0A2Y9FZZ3	Armadillo repeat-containing protein 4.	Coiled-coil domain-containing protein 63.	0.694
LOC101341685	LOC101347010	A0A2Y9E350	A0A2Y9DRP5	Armadillo repeat-containing protein 4.	Protein PIH1D3.	0.410
LOC101341685	LOC101348861	A0A2Y9E350	A0A2Y9DP92	Armadillo repeat-containing protein 4.	Coiled-coil domain-containing protein 151 isoform X1.	0.843
LOC101341685	LOC101353533	A0A2Y9E350	A0A2Y9EAR8	Armadillo repeat-containing protein 4.	EF-hand calcium-binding domain-containing protein 1-like.	0.711
LOC101341685	LOC101355410	A0A2Y9E350	A0A2Y9QGW2	Armadillo repeat-containing protein 4.	Tetratricopeptide repeat protein 25.	0.869
LOC101341685	LOC101356152	A0A2Y9E350	A0A2Y9E2U7	Armadillo repeat-containing protein 4.	Dynein assembly factor 5, axonemal.	0.565
LOC101341685	LOC101358135	A0A2Y9E350	A0A2Y9DGX5	Armadillo repeat-containing protein 4.	Dynein intermediate chain 2, axonemal.	0.587
LOC101341685	LOC101359038	A0A2Y9E350	A0A2Y9DWS4	Armadillo repeat-containing protein 4.	Coiled-coil domain-containing protein 114.	0.836
LOC101341685	LOC101360738	A0A2Y9E350	A0A2Y9DDM5	Armadillo repeat-containing protein 4.	Dynein intermediate chain 1, axonemal.	0.466
LOC101341685	LOC101361589	A0A2Y9E350	A0A2Y9QKE8	Armadillo repeat-containing protein 4.	Protein tilB homolog.	0.589
LOC101342249	LOC101343989	A0A2Y9DNA3	A0A2Y9D6A1	Dynein assembly factor 1, axonemal.	Zinc finger MYND domain-containing protein 10; Plays a role in axonemal structure organization and motility. Involved in axonemal pre-assembly of inner and outer dynein arms (IDA and ODA, respectively) for proper axoneme building for cilia motility. May act by indirectly regulating transcription of dynein proteins. Belongs to the ZMYND10 family.	0.623
LOC101342249	LOC101345511	A0A2Y9DNA3	A0A2Y9QJC3	Dynein assembly factor 1, axonemal.	Protein kintoun; Required for cytoplasmic pre-assembly of axonemal dyneins, thereby playing a central role in motility in cilia and flagella. Involved in pre-assembly of dynein arm complexes in the cytoplasm before intraflagellar transport loads them for the ciliary compartment.	0.417
LOC101342249	LOC101345875	A0A2Y9DNA3	A0A2Y9DHC7	Dynein assembly factor 1, axonemal.	Coiled-coil domain-containing protein 103.	0.592
LOC101342249	LOC101347010	A0A2Y9DNA3	A0A2Y9DRP5	Dynein assembly factor 1, axonemal.	Protein PIH1D3.	0.483
LOC101342249	LOC101356152	A0A2Y9DNA3	A0A2Y9E2U7	Dynein assembly factor 1, axonemal.	Dynein assembly factor 5, axonemal.	0.551
LOC101342249	LOC101358135	A0A2Y9DNA3	A0A2Y9DGX5	Dynein assembly factor 1, axonemal.	Dynein intermediate chain 2, axonemal.	0.702
LOC101342249	LOC101360738	A0A2Y9DNA3	A0A2Y9DDM5	Dynein assembly factor 1, axonemal.	Dynein intermediate chain 1, axonemal.	0.653