12 items (Trichechus manatus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC101344627	Cytoplasmic dynein 1 intermediate chain 2 isoform X1. (632 aa)
	LOC101352841	Cytoplasmic dynein 2 light intermediate chain 1. (351 aa)
	LOC101361243	LOW QUALITY PROTEIN: axonemal dynein light intermediate polypeptide 1. (280 aa)
	LOC101360738	Dynein intermediate chain 1, axonemal. (764 aa)
	LOC101358135	Dynein intermediate chain 2, axonemal. (744 aa)
	LOC101354254	WD repeat-containing protein 34. (536 aa)
	LOC101352536	Dynein light intermediate chain; Acts as one of several non-catalytic accessory components of the cytoplasmic dynein 1 complex that are thought to be involved in linking dynein to cargos and to adapter proteins that regulate dynein function. Cytoplasmic dynein 1 acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules. May play a role in binding dynein to membranous organelles or chromosomes. (521 aa)
	LOC111822311	Cytoplasmic dynein 1 intermediate chain 1-like. (158 aa)
	LOC101350092	WD repeat-containing protein 60. (1062 aa)
	LOC101354146	Dynein light chain 1, axonemal. (111 aa)
	LOC101351973	WD repeat-containing protein 78. (808 aa)
	LOC101344071	Cytoplasmic dynein 1 intermediate chain 1. (310 aa)

Your Current Organism:

Trichechus manatus

NCBI taxonomy Id: 127582
Other names: Florida manatee, T. manatus latirostris, Trichechus manatus latirostris

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC101344071	LOC101344627	A0A2Y9RW92	A0A2Y9R3X4	Cytoplasmic dynein 1 intermediate chain 1.	Cytoplasmic dynein 1 intermediate chain 2 isoform X1.	0.959
LOC101344071	LOC101352536	A0A2Y9RW92	A0A2Y9DMR1	Cytoplasmic dynein 1 intermediate chain 1.	Dynein light intermediate chain; Acts as one of several non-catalytic accessory components of the cytoplasmic dynein 1 complex that are thought to be involved in linking dynein to cargos and to adapter proteins that regulate dynein function. Cytoplasmic dynein 1 acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules. May play a role in binding dynein to membranous organelles or chromosomes.	0.990
LOC101344071	LOC101352841	A0A2Y9RW92	A0A2Y9D8A1	Cytoplasmic dynein 1 intermediate chain 1.	Cytoplasmic dynein 2 light intermediate chain 1.	0.964
LOC101344071	LOC111822311	A0A2Y9RW92	A0A2Y9RX84	Cytoplasmic dynein 1 intermediate chain 1.	Cytoplasmic dynein 1 intermediate chain 1-like.	0.878
LOC101344627	LOC101344071	A0A2Y9R3X4	A0A2Y9RW92	Cytoplasmic dynein 1 intermediate chain 2 isoform X1.	Cytoplasmic dynein 1 intermediate chain 1.	0.959
LOC101344627	LOC101352536	A0A2Y9R3X4	A0A2Y9DMR1	Cytoplasmic dynein 1 intermediate chain 2 isoform X1.	Dynein light intermediate chain; Acts as one of several non-catalytic accessory components of the cytoplasmic dynein 1 complex that are thought to be involved in linking dynein to cargos and to adapter proteins that regulate dynein function. Cytoplasmic dynein 1 acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules. May play a role in binding dynein to membranous organelles or chromosomes.	0.985
LOC101344627	LOC101352841	A0A2Y9R3X4	A0A2Y9D8A1	Cytoplasmic dynein 1 intermediate chain 2 isoform X1.	Cytoplasmic dynein 2 light intermediate chain 1.	0.965
LOC101344627	LOC111822311	A0A2Y9R3X4	A0A2Y9RX84	Cytoplasmic dynein 1 intermediate chain 2 isoform X1.	Cytoplasmic dynein 1 intermediate chain 1-like.	0.609
LOC101350092	LOC101352536	A0A2Y9E3W6	A0A2Y9DMR1	WD repeat-containing protein 60.	Dynein light intermediate chain; Acts as one of several non-catalytic accessory components of the cytoplasmic dynein 1 complex that are thought to be involved in linking dynein to cargos and to adapter proteins that regulate dynein function. Cytoplasmic dynein 1 acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules. May play a role in binding dynein to membranous organelles or chromosomes.	0.714
LOC101350092	LOC101352841	A0A2Y9E3W6	A0A2Y9D8A1	WD repeat-containing protein 60.	Cytoplasmic dynein 2 light intermediate chain 1.	0.986
LOC101350092	LOC101354254	A0A2Y9E3W6	A0A2Y9DJU4	WD repeat-containing protein 60.	WD repeat-containing protein 34.	0.975
LOC101351973	LOC101352536	A0A2Y9R3G2	A0A2Y9DMR1	WD repeat-containing protein 78.	Dynein light intermediate chain; Acts as one of several non-catalytic accessory components of the cytoplasmic dynein 1 complex that are thought to be involved in linking dynein to cargos and to adapter proteins that regulate dynein function. Cytoplasmic dynein 1 acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules. May play a role in binding dynein to membranous organelles or chromosomes.	0.572
LOC101351973	LOC101352841	A0A2Y9R3G2	A0A2Y9D8A1	WD repeat-containing protein 78.	Cytoplasmic dynein 2 light intermediate chain 1.	0.617
LOC101352536	LOC101344071	A0A2Y9DMR1	A0A2Y9RW92	Dynein light intermediate chain; Acts as one of several non-catalytic accessory components of the cytoplasmic dynein 1 complex that are thought to be involved in linking dynein to cargos and to adapter proteins that regulate dynein function. Cytoplasmic dynein 1 acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules. May play a role in binding dynein to membranous organelles or chromosomes.	Cytoplasmic dynein 1 intermediate chain 1.	0.990
LOC101352536	LOC101344627	A0A2Y9DMR1	A0A2Y9R3X4	Dynein light intermediate chain; Acts as one of several non-catalytic accessory components of the cytoplasmic dynein 1 complex that are thought to be involved in linking dynein to cargos and to adapter proteins that regulate dynein function. Cytoplasmic dynein 1 acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules. May play a role in binding dynein to membranous organelles or chromosomes.	Cytoplasmic dynein 1 intermediate chain 2 isoform X1.	0.985
LOC101352536	LOC101350092	A0A2Y9DMR1	A0A2Y9E3W6	Dynein light intermediate chain; Acts as one of several non-catalytic accessory components of the cytoplasmic dynein 1 complex that are thought to be involved in linking dynein to cargos and to adapter proteins that regulate dynein function. Cytoplasmic dynein 1 acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules. May play a role in binding dynein to membranous organelles or chromosomes.	WD repeat-containing protein 60.	0.714
LOC101352536	LOC101351973	A0A2Y9DMR1	A0A2Y9R3G2	Dynein light intermediate chain; Acts as one of several non-catalytic accessory components of the cytoplasmic dynein 1 complex that are thought to be involved in linking dynein to cargos and to adapter proteins that regulate dynein function. Cytoplasmic dynein 1 acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules. May play a role in binding dynein to membranous organelles or chromosomes.	WD repeat-containing protein 78.	0.572
LOC101352536	LOC101352841	A0A2Y9DMR1	A0A2Y9D8A1	Dynein light intermediate chain; Acts as one of several non-catalytic accessory components of the cytoplasmic dynein 1 complex that are thought to be involved in linking dynein to cargos and to adapter proteins that regulate dynein function. Cytoplasmic dynein 1 acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules. May play a role in binding dynein to membranous organelles or chromosomes.	Cytoplasmic dynein 2 light intermediate chain 1.	0.945
LOC101352536	LOC101354254	A0A2Y9DMR1	A0A2Y9DJU4	Dynein light intermediate chain; Acts as one of several non-catalytic accessory components of the cytoplasmic dynein 1 complex that are thought to be involved in linking dynein to cargos and to adapter proteins that regulate dynein function. Cytoplasmic dynein 1 acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules. May play a role in binding dynein to membranous organelles or chromosomes.	WD repeat-containing protein 34.	0.572
LOC101352536	LOC101358135	A0A2Y9DMR1	A0A2Y9DGX5	Dynein light intermediate chain; Acts as one of several non-catalytic accessory components of the cytoplasmic dynein 1 complex that are thought to be involved in linking dynein to cargos and to adapter proteins that regulate dynein function. Cytoplasmic dynein 1 acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules. May play a role in binding dynein to membranous organelles or chromosomes.	Dynein intermediate chain 2, axonemal.	0.573