46 items (Trichechus manatus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC101351060	Carboxypeptidase B2. (412 aa)
	LOC101353905	LOW QUALITY PROTEIN: calpastatin. (761 aa)
	LOC101358666	Glia-derived nexin isoform X1; Belongs to the serpin family. (419 aa)
	LOC101344711	cystatin-F. (145 aa)
	LOC101344340	Interleukin-1 receptor type 2 isoform X1. (417 aa)
	LOC101350167	Metalloendopeptidase. (525 aa)
	LOC101348622	Bcl-2-like protein 12 isoform X1. (253 aa)
	LOC101351951	Growth arrest-specific protein 1. (363 aa)
	LOC101358617	Rhomboid-related protein 4. (330 aa)
	LOC101360352	Leucine-rich repeat serine/threonine-protein kinase 2. (2508 aa)
	LOC101344820	Golgi apparatus protein 1 isoform X1. (1174 aa)
	LOC101359704	Plasminogen receptor (KT). (147 aa)
	LOC101341736	Spermatid nuclear transition protein 1. (55 aa)
	LOC101350804	Carboxypeptidase B2-like. (412 aa)
	LOC101344965	Collagen and calcium-binding EGF domain-containing protein 1. (408 aa)
	LOC101344047	Thrombospondin-1. (1170 aa)
	LOC101344804	Probable inactive serine protease 37 isoform X1. (235 aa)
	LOC101353674	LOW QUALITY PROTEIN: caspase recruitment domain-containing protein 18. (95 aa)
	LOC101346599	Transmembrane protein 98. (226 aa)
	LOC101360706	Battenin. (438 aa)
	LOC101354038	BAG family molecular chaperone regulator 2. (211 aa)
	LOC101358882	Lysophospholipid acyltransferase 5 isoform X1; Belongs to the membrane-bound acyltransferase family. (487 aa)
	LOC101348466	Plasminogen activator inhibitor 1; Belongs to the serpin family. (400 aa)
	LOC101353096	Serine protease hepsin; Belongs to the peptidase S1 family. (417 aa)
	LOC101361058	Protein S100-A10; Belongs to the S-100 family. (97 aa)
	LOC101360212	Heparanase. (540 aa)
	LOC101351773	Gamma-glutamylcyclotransferase; Catalyzes the cleavage of glutathione into 5-oxo-L-proline and a Cys-Gly dipeptide. Acts specifically on glutathione, but not on other gamma-glutamyl peptides; Belongs to the gamma-glutamylcyclotransferase family. (226 aa)
	LOC101352264	Gelsolin isoform X2. (777 aa)
	LOC101344726	Protein naked cuticle homolog 2. (470 aa)
	LOC101341218	Melanotransferrin; Belongs to the transferrin family. (738 aa)
	LOC101344435	Low-density lipoprotein receptor class A domain-containing protein 3 isoform X1. (345 aa)
	LOC101348995	cAMP-dependent protein kinase catalytic subunit alpha. (293 aa)
	LOC101341555	Type II inositol 1,4,5-trisphosphate 5-phosphatase isoform X1. (749 aa)
	LOC101360481	Nuclear transition protein 2. (178 aa)
	LOC101351227	Contactin-2 isoform X1. (1068 aa)
	LOC101340451	Alpha-2-antiplasmin; Belongs to the serpin family. (485 aa)
	LOC101360621	Tetranectin. (202 aa)
	LOC101340600	Ribosomal protein S6 kinase. (733 aa)
	LOC101342638	cAMP-dependent protein kinase catalytic subunit beta isoform X1; Belongs to the protein kinase superfamily. (398 aa)
	LOC101354634	Spondin-1. (807 aa)
	LOC101360631	NLR family CARD domain-containing protein 4 isoform X1. (1024 aa)
	LOC101347887	Cathepsin Z; Belongs to the peptidase C1 family. (304 aa)
	LOC101357346	Intraflagellar transport protein 52 homolog isoform X1. (446 aa)
	LOC101355670	Nucleolar protein 3. (208 aa)
	LOC101347492	E3 ubiquitin-protein ligase RNF139. (758 aa)
	LOC101345869	Transcription factor RFX4 isoform X1. (744 aa)

Your Current Organism:

Trichechus manatus

NCBI taxonomy Id: 127582
Other names: Florida manatee, T. manatus latirostris, Trichechus manatus latirostris

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC101340451	LOC101350804	A0A2Y9DKF1	A0A2Y9DLB9	Alpha-2-antiplasmin; Belongs to the serpin family.	Carboxypeptidase B2-like.	0.507
LOC101340451	LOC101351060	A0A2Y9DKF1	A0A2Y9R1A8	Alpha-2-antiplasmin; Belongs to the serpin family.	Carboxypeptidase B2.	0.507
LOC101341736	LOC101360481	A0A2Y9DL94	A0A2Y9QQ12	Spermatid nuclear transition protein 1.	Nuclear transition protein 2.	0.762
LOC101342638	LOC101348995	A0A2Y9D7C8	A0A2Y9QFS5	cAMP-dependent protein kinase catalytic subunit beta isoform X1; Belongs to the protein kinase superfamily.	cAMP-dependent protein kinase catalytic subunit alpha.	0.900
LOC101344047	LOC101348466	A0A2Y9DUD7	A0A2Y9E5Y9	Thrombospondin-1.	Plasminogen activator inhibitor 1; Belongs to the serpin family.	0.500
LOC101344965	LOC101351773	A0A2Y9DRK0	A0A2Y9ED31	Collagen and calcium-binding EGF domain-containing protein 1.	Gamma-glutamylcyclotransferase; Catalyzes the cleavage of glutathione into 5-oxo-L-proline and a Cys-Gly dipeptide. Acts specifically on glutathione, but not on other gamma-glutamyl peptides; Belongs to the gamma-glutamylcyclotransferase family.	0.443
LOC101348466	LOC101344047	A0A2Y9E5Y9	A0A2Y9DUD7	Plasminogen activator inhibitor 1; Belongs to the serpin family.	Thrombospondin-1.	0.500
LOC101348466	LOC101358666	A0A2Y9E5Y9	A0A2Y9R6C6	Plasminogen activator inhibitor 1; Belongs to the serpin family.	Glia-derived nexin isoform X1; Belongs to the serpin family.	0.612
LOC101348995	LOC101342638	A0A2Y9QFS5	A0A2Y9D7C8	cAMP-dependent protein kinase catalytic subunit alpha.	cAMP-dependent protein kinase catalytic subunit beta isoform X1; Belongs to the protein kinase superfamily.	0.900
LOC101350804	LOC101340451	A0A2Y9DLB9	A0A2Y9DKF1	Carboxypeptidase B2-like.	Alpha-2-antiplasmin; Belongs to the serpin family.	0.507
LOC101350804	LOC101351060	A0A2Y9DLB9	A0A2Y9R1A8	Carboxypeptidase B2-like.	Carboxypeptidase B2.	0.900
LOC101351060	LOC101340451	A0A2Y9R1A8	A0A2Y9DKF1	Carboxypeptidase B2.	Alpha-2-antiplasmin; Belongs to the serpin family.	0.507
LOC101351060	LOC101350804	A0A2Y9R1A8	A0A2Y9DLB9	Carboxypeptidase B2.	Carboxypeptidase B2-like.	0.900
LOC101351773	LOC101344965	A0A2Y9ED31	A0A2Y9DRK0	Gamma-glutamylcyclotransferase; Catalyzes the cleavage of glutathione into 5-oxo-L-proline and a Cys-Gly dipeptide. Acts specifically on glutathione, but not on other gamma-glutamyl peptides; Belongs to the gamma-glutamylcyclotransferase family.	Collagen and calcium-binding EGF domain-containing protein 1.	0.443
LOC101353674	LOC101360631	A0A2Y9DY37	A0A2Y9D8V0	LOW QUALITY PROTEIN: caspase recruitment domain-containing protein 18.	NLR family CARD domain-containing protein 4 isoform X1.	0.451
LOC101358666	LOC101348466	A0A2Y9R6C6	A0A2Y9E5Y9	Glia-derived nexin isoform X1; Belongs to the serpin family.	Plasminogen activator inhibitor 1; Belongs to the serpin family.	0.612
LOC101360481	LOC101341736	A0A2Y9QQ12	A0A2Y9DL94	Nuclear transition protein 2.	Spermatid nuclear transition protein 1.	0.762
LOC101360631	LOC101353674	A0A2Y9D8V0	A0A2Y9DY37	NLR family CARD domain-containing protein 4 isoform X1.	LOW QUALITY PROTEIN: caspase recruitment domain-containing protein 18.	0.451