(4 nodes) CRD-mediated mRNA stability complex network (Trichechus manatus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC101343102	Cold shock domain-containing protein E1 isoform X5. (844 aa)
	LOC101359794	ATP-dependent RNA helicase A isoform X1. (1281 aa)
	LOC101343999	Heterogeneous nuclear ribonucleoprotein Q isoform X1. (620 aa)
	LOC101354506	Heterogeneous nuclear ribonucleoprotein U isoform X1. (825 aa)

Your Current Organism:

Trichechus manatus

NCBI taxonomy Id: 127582
Other names: Florida manatee, T. manatus latirostris, Trichechus manatus latirostris

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC101343102	LOC101343999	A0A2Y9RFC2	A0A2Y9E855	Cold shock domain-containing protein E1 isoform X5.	Heterogeneous nuclear ribonucleoprotein Q isoform X1.	0.452
LOC101343999	LOC101343102	A0A2Y9E855	A0A2Y9RFC2	Heterogeneous nuclear ribonucleoprotein Q isoform X1.	Cold shock domain-containing protein E1 isoform X5.	0.452
LOC101343999	LOC101354506	A0A2Y9E855	A0A2Y9DJT4	Heterogeneous nuclear ribonucleoprotein Q isoform X1.	Heterogeneous nuclear ribonucleoprotein U isoform X1.	0.844
LOC101343999	LOC101359794	A0A2Y9E855	A0A2Y9QPD9	Heterogeneous nuclear ribonucleoprotein Q isoform X1.	ATP-dependent RNA helicase A isoform X1.	0.686
LOC101354506	LOC101343999	A0A2Y9DJT4	A0A2Y9E855	Heterogeneous nuclear ribonucleoprotein U isoform X1.	Heterogeneous nuclear ribonucleoprotein Q isoform X1.	0.844
LOC101354506	LOC101359794	A0A2Y9DJT4	A0A2Y9QPD9	Heterogeneous nuclear ribonucleoprotein U isoform X1.	ATP-dependent RNA helicase A isoform X1.	0.803
LOC101359794	LOC101343999	A0A2Y9QPD9	A0A2Y9E855	ATP-dependent RNA helicase A isoform X1.	Heterogeneous nuclear ribonucleoprotein Q isoform X1.	0.686
LOC101359794	LOC101354506	A0A2Y9QPD9	A0A2Y9DJT4	ATP-dependent RNA helicase A isoform X1.	Heterogeneous nuclear ribonucleoprotein U isoform X1.	0.803