38 items (Trichechus manatus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC101348436	40S ribosomal protein S28. (69 aa)
	LOC101348359	60S ribosomal protein L6; Belongs to the eukaryotic ribosomal protein eL6 family. (287 aa)
	LOC101351592	60S ribosomal protein L24. (157 aa)
	LOC101357184	60S ribosomal protein L30. (115 aa)
	LOC101358702	60S ribosomal protein L32. (135 aa)
	LOC101351767	Ribosomal protein L19; Belongs to the eukaryotic ribosomal protein eL19 family. (196 aa)
	LOC101343006	RNA-binding protein Musashi homolog 2 isoform X1. (328 aa)
	LOC101354071	La-related protein 6 isoform X1. (492 aa)
	LOC101360417	eIF-2-alpha kinase activator GCN1. (2671 aa)
	LOC101343406	40S ribosomal protein S29. (56 aa)
	LOC101345972	Protein lin-28 homolog A. (205 aa)
	LOC101344980	60S ribosomal protein L18a; Belongs to the eukaryotic ribosomal protein eL20 family. (176 aa)
	LOC101353589	Nuclear fragile X mental retardation-interacting protein 2. (695 aa)
	LOC101359222	RELT-like protein 1. (271 aa)
	LOC101341949	60S ribosomal protein L8. (257 aa)
	LOC101361222	60S ribosomal protein L31. (125 aa)
	LOC101346538	60S ribosomal protein L7a. (266 aa)
	LOC101344060	40S ribosomal protein S26; Belongs to the eukaryotic ribosomal protein eS26 family. (115 aa)
	LOC101360207	ATP-binding cassette sub-family F member 1 isoform X1. (874 aa)
	LOC101356088	RWD domain-containing protein 4 isoform X1. (188 aa)
	LOC101359794	ATP-dependent RNA helicase A isoform X1. (1281 aa)
	LOC105756128	60S ribosomal protein L30-like. (112 aa)
	LOC101358994	Transcription factor BTF3; Belongs to the NAC-beta family. (177 aa)
	LOC111820707	LOW QUALITY PROTEIN: 60S ribosomal protein L31. (128 aa)
	LOC101357547	40S ribosomal protein S23; Belongs to the universal ribosomal protein uS12 family. (143 aa)
	LOC101342853	40S ribosomal protein S4; Belongs to the eukaryotic ribosomal protein eS4 family. (263 aa)
	LOC101344970	eIF-2-alpha kinase GCN2 isoform X1. (1649 aa)
	LOC101356793	RING finger protein unkempt homolog. (810 aa)
	LOC101340723	RNA-binding protein Musashi homolog 1. (448 aa)
	LOC101355269	60S ribosomal protein L36; Belongs to the eukaryotic ribosomal protein eL36 family. (105 aa)
	LOC111821564	60S ribosomal protein L30-like. (145 aa)
	LOC101350980	Ataxin-2. (1194 aa)
	LOC101358408	40S ribosomal protein S26; Belongs to the eukaryotic ribosomal protein eS26 family. (115 aa)
	LOC101348546	La-related protein 4B isoform X1. (1765 aa)
	LOC111821969	LOW QUALITY PROTEIN: eIF-2-alpha kinase GCN2-like. (1121 aa)
	LOC101360449	Protein IMPACT isoform X2. (318 aa)
	LOC101347351	Zinc finger CCHC domain-containing protein 13. (172 aa)
	LOC101346748	Developmentally-regulated GTP-binding protein 1. (367 aa)

Your Current Organism:

Trichechus manatus

NCBI taxonomy Id: 127582
Other names: Florida manatee, T. manatus latirostris, Trichechus manatus latirostris

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC101340723	LOC101343006	A0A2Y9R4J7	A0A2Y9DNH3	RNA-binding protein Musashi homolog 1.	RNA-binding protein Musashi homolog 2 isoform X1.	0.901
LOC101341949	LOC101342853	A0A2Y9E5B9	A0A2Y9DTQ4	60S ribosomal protein L8.	40S ribosomal protein S4; Belongs to the eukaryotic ribosomal protein eS4 family.	0.999
LOC101341949	LOC101343406	A0A2Y9E5B9	A0A2Y9DAU4	60S ribosomal protein L8.	40S ribosomal protein S29.	0.999
LOC101341949	LOC101344060	A0A2Y9E5B9	A0A2Y9G1T7	60S ribosomal protein L8.	40S ribosomal protein S26; Belongs to the eukaryotic ribosomal protein eS26 family.	0.974
LOC101341949	LOC101344980	A0A2Y9E5B9	A0A2Y9DZX1	60S ribosomal protein L8.	60S ribosomal protein L18a; Belongs to the eukaryotic ribosomal protein eL20 family.	0.999
LOC101341949	LOC101346538	A0A2Y9E5B9	A0A2Y9E7S8	60S ribosomal protein L8.	60S ribosomal protein L7a.	0.999
LOC101341949	LOC101346748	A0A2Y9E5B9	A0A2Y9DR21	60S ribosomal protein L8.	Developmentally-regulated GTP-binding protein 1.	0.740
LOC101341949	LOC101348359	A0A2Y9E5B9	A0A2Y9DQI1	60S ribosomal protein L8.	60S ribosomal protein L6; Belongs to the eukaryotic ribosomal protein eL6 family.	0.999
LOC101341949	LOC101348436	A0A2Y9E5B9	A0A2Y9DQP2	60S ribosomal protein L8.	40S ribosomal protein S28.	0.998
LOC101341949	LOC101351592	A0A2Y9E5B9	A0A2Y9DNZ7	60S ribosomal protein L8.	60S ribosomal protein L24.	0.999
LOC101341949	LOC101351767	A0A2Y9E5B9	A0A2Y9DNR0	60S ribosomal protein L8.	Ribosomal protein L19; Belongs to the eukaryotic ribosomal protein eL19 family.	0.999
LOC101341949	LOC101355269	A0A2Y9E5B9	A0A2Y9RAX4	60S ribosomal protein L8.	60S ribosomal protein L36; Belongs to the eukaryotic ribosomal protein eL36 family.	0.998
LOC101341949	LOC101357184	A0A2Y9E5B9	A0A2Y9DA01	60S ribosomal protein L8.	60S ribosomal protein L30.	0.964
LOC101341949	LOC101357547	A0A2Y9E5B9	A0A2Y9R0V4	60S ribosomal protein L8.	40S ribosomal protein S23; Belongs to the universal ribosomal protein uS12 family.	0.999
LOC101341949	LOC101358408	A0A2Y9E5B9	A0A2Y9RED9	60S ribosomal protein L8.	40S ribosomal protein S26; Belongs to the eukaryotic ribosomal protein eS26 family.	0.974
LOC101341949	LOC101358702	A0A2Y9E5B9	A0A2Y9D5Y1	60S ribosomal protein L8.	60S ribosomal protein L32.	0.999
LOC101341949	LOC101358994	A0A2Y9E5B9	A0A2Y9QU87	60S ribosomal protein L8.	Transcription factor BTF3; Belongs to the NAC-beta family.	0.719
LOC101341949	LOC101360207	A0A2Y9E5B9	A0A2Y9QH15	60S ribosomal protein L8.	ATP-binding cassette sub-family F member 1 isoform X1.	0.536
LOC101341949	LOC101360417	A0A2Y9E5B9	A0A2Y9DQK6	60S ribosomal protein L8.	eIF-2-alpha kinase activator GCN1.	0.795
LOC101341949	LOC101361222	A0A2Y9E5B9	A0A2Y9E718	60S ribosomal protein L8.	60S ribosomal protein L31.	0.980