23 items (Trichechus manatus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC101354123	U3 small nucleolar ribonucleoprotein protein IMP4. (291 aa)
	LOC101342529	U3 small nucleolar RNA-associated protein 6 homolog. (598 aa)
	LOC101346003	Nucleolar complex protein 4 homolog. (516 aa)
	LOC101346159	Nucleolar protein 14. (854 aa)
	LOC101359637	WD repeat-containing protein 3. (943 aa)
	LOC101342175	Ribosomal RNA-processing protein 7 homolog A. (279 aa)
	LOC101341080	Pescadillo homolog; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome; Belongs to the pescadillo family. (588 aa)
	LOC101349118	Ribosome biogenesis protein WDR12; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome. (423 aa)
	LOC101340637	Protein CMSS1. (327 aa)
	LOC101343508	WD repeat-containing protein 36. (895 aa)
	LOC101347843	U3 small nucleolar RNA-associated protein 18 homolog. (555 aa)
	LOC101340701	U3 small nucleolar ribonucleoprotein protein IMP3. (233 aa)
	LOC101361084	Ribosome biogenesis protein NSA2 homolog. (260 aa)
	LOC101340891	Nucleolar protein 6. (1141 aa)
	LOC101349180	U3 small nucleolar ribonucleoprotein protein MPP10; Component of the 60-80S U3 small nucleolar ribonucleoprotein (U3 snoRNP). Required for the early cleavages during pre-18S ribosomal RNA processing; Belongs to the MPP10 family. (676 aa)
	LOC101345026	Probable ribosome biogenesis protein RLP24. (163 aa)
	LOC101350347	Ribosome biogenesis protein BOP1; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome. (737 aa)
	LOC101346595	Periodic tryptophan protein 2 homolog. (650 aa)
	LOC101356146	Nucleolar complex protein 2 homolog isoform X1. (703 aa)
	LOC111819696	U3 small nucleolar ribonucleoprotein protein IMP4-like. (209 aa)
	LOC101358916	Small subunit processome component 20 homolog isoform X1. (2807 aa)
	LOC101352332	Ribosome biogenesis protein BMS1 homolog. (1287 aa)
	LOC101358620	Hormonally up-regulated neu tumor-associated kinase. (709 aa)

Your Current Organism:

Trichechus manatus

NCBI taxonomy Id: 127582
Other names: Florida manatee, T. manatus latirostris, Trichechus manatus latirostris

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC101340637	LOC101340891	A0A2Y9DNX5	A0A2Y9DD55	Protein CMSS1.	Nucleolar protein 6.	0.473
LOC101340637	LOC101343508	A0A2Y9DNX5	A0A2Y9DLW9	Protein CMSS1.	WD repeat-containing protein 36.	0.543
LOC101340637	LOC101345026	A0A2Y9DNX5	A0A2Y9DH58	Protein CMSS1.	Probable ribosome biogenesis protein RLP24.	0.511
LOC101340637	LOC101346159	A0A2Y9DNX5	A0A2Y9DY52	Protein CMSS1.	Nucleolar protein 14.	0.495
LOC101340637	LOC101352332	A0A2Y9DNX5	A0A2Y9QFY7	Protein CMSS1.	Ribosome biogenesis protein BMS1 homolog.	0.545
LOC101340637	LOC101356146	A0A2Y9DNX5	A0A2Y9RGU9	Protein CMSS1.	Nucleolar complex protein 2 homolog isoform X1.	0.424
LOC101340701	LOC101340891	A0A2Y9DHN6	A0A2Y9DD55	U3 small nucleolar ribonucleoprotein protein IMP3.	Nucleolar protein 6.	0.989
LOC101340701	LOC101341080	A0A2Y9DHN6	A0A2Y9DRN5	U3 small nucleolar ribonucleoprotein protein IMP3.	Pescadillo homolog; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome; Belongs to the pescadillo family.	0.569
LOC101340701	LOC101342175	A0A2Y9DHN6	A0A2Y9DRX0	U3 small nucleolar ribonucleoprotein protein IMP3.	Ribosomal RNA-processing protein 7 homolog A.	0.987
LOC101340701	LOC101342529	A0A2Y9DHN6	A0A2Y9E221	U3 small nucleolar ribonucleoprotein protein IMP3.	U3 small nucleolar RNA-associated protein 6 homolog.	0.992
LOC101340701	LOC101343508	A0A2Y9DHN6	A0A2Y9DLW9	U3 small nucleolar ribonucleoprotein protein IMP3.	WD repeat-containing protein 36.	0.984
LOC101340701	LOC101345026	A0A2Y9DHN6	A0A2Y9DH58	U3 small nucleolar ribonucleoprotein protein IMP3.	Probable ribosome biogenesis protein RLP24.	0.927
LOC101340701	LOC101346003	A0A2Y9DHN6	A0A2Y9E1C9	U3 small nucleolar ribonucleoprotein protein IMP3.	Nucleolar complex protein 4 homolog.	0.971
LOC101340701	LOC101346159	A0A2Y9DHN6	A0A2Y9DY52	U3 small nucleolar ribonucleoprotein protein IMP3.	Nucleolar protein 14.	0.964
LOC101340701	LOC101346595	A0A2Y9DHN6	A0A2Y9RTA3	U3 small nucleolar ribonucleoprotein protein IMP3.	Periodic tryptophan protein 2 homolog.	0.993
LOC101340701	LOC101347843	A0A2Y9DHN6	A0A2Y9DNV2	U3 small nucleolar ribonucleoprotein protein IMP3.	U3 small nucleolar RNA-associated protein 18 homolog.	0.991
LOC101340701	LOC101349118	A0A2Y9DHN6	A0A2Y9DPK6	U3 small nucleolar ribonucleoprotein protein IMP3.	Ribosome biogenesis protein WDR12; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	0.862
LOC101340701	LOC101349180	A0A2Y9DHN6	A0A2Y9DDP5	U3 small nucleolar ribonucleoprotein protein IMP3.	U3 small nucleolar ribonucleoprotein protein MPP10; Component of the 60-80S U3 small nucleolar ribonucleoprotein (U3 snoRNP). Required for the early cleavages during pre-18S ribosomal RNA processing; Belongs to the MPP10 family.	0.997
LOC101340701	LOC101350347	A0A2Y9DHN6	A0A2Y9RUX1	U3 small nucleolar ribonucleoprotein protein IMP3.	Ribosome biogenesis protein BOP1; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	0.461
LOC101340701	LOC101352332	A0A2Y9DHN6	A0A2Y9QFY7	U3 small nucleolar ribonucleoprotein protein IMP3.	Ribosome biogenesis protein BMS1 homolog.	0.990