18 items (Trichechus manatus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC101359695	Syntaxin-17; Belongs to the syntaxin family. (302 aa)
	LOC101353091	t-SNARE domain-containing protein 1. (504 aa)
	LOC101356256	Synaptosomal-associated protein 29. (253 aa)
	LOC101347111	Synaptobrevin homolog YKT6; Belongs to the synaptobrevin family. (198 aa)
	LOC101361633	Syntaxin-5 isoform X1; Belongs to the syntaxin family. (355 aa)
	LOC101342354	Vesicle-associated membrane protein 4. (141 aa)
	LOC101342605	Alpha-soluble NSF attachment protein isoform X1. (295 aa)
	LOC101352194	Beta-soluble NSF attachment protein isoform X1. (298 aa)
	LOC101343174	Syntaxin-8. (236 aa)
	LOC101342400	Golgi SNAP receptor complex member 2 isoform X1; Involved in transport of proteins from the cis/medial-Golgi to the trans-Golgi network. (212 aa)
	LOC101348328	Complexin-2. (134 aa)
	LOC101348396	Syntaxin-16 isoform X1; Belongs to the syntaxin family. (322 aa)
	LOC101347243	Vesicle transport through interaction with t-SNAREs homolog 1A isoform X1. (217 aa)
	LOC101360243	Ubiquitin-protein ligase E3B. (774 aa)
	LOC101357896	Synaptosomal-associated protein; Belongs to the SNAP-25 family. (211 aa)
	LOC101350087	Vesicle transport protein USE1. (273 aa)
	LOC101354105	Syntaxin-18 isoform X1. (336 aa)
	LOC101345143	Synaptosomal-associated protein 47 isoform X1. (468 aa)

Your Current Organism:

Trichechus manatus

NCBI taxonomy Id: 127582
Other names: Florida manatee, T. manatus latirostris, Trichechus manatus latirostris

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC101342354	LOC101342400	A0A2Y9DZU0	A0A2Y9DGU8	Vesicle-associated membrane protein 4.	Golgi SNAP receptor complex member 2 isoform X1; Involved in transport of proteins from the cis/medial-Golgi to the trans-Golgi network.	0.705
LOC101342354	LOC101342605	A0A2Y9DZU0	A0A2Y9DUS7	Vesicle-associated membrane protein 4.	Alpha-soluble NSF attachment protein isoform X1.	0.779
LOC101342354	LOC101343174	A0A2Y9DZU0	A0A2Y9DKS3	Vesicle-associated membrane protein 4.	Syntaxin-8.	0.857
LOC101342354	LOC101345143	A0A2Y9DZU0	A0A2Y9RT55	Vesicle-associated membrane protein 4.	Synaptosomal-associated protein 47 isoform X1.	0.708
LOC101342354	LOC101347111	A0A2Y9DZU0	A0A2Y9E2V5	Vesicle-associated membrane protein 4.	Synaptobrevin homolog YKT6; Belongs to the synaptobrevin family.	0.707
LOC101342354	LOC101347243	A0A2Y9DZU0	A0A2Y9QQH8	Vesicle-associated membrane protein 4.	Vesicle transport through interaction with t-SNAREs homolog 1A isoform X1.	0.999
LOC101342354	LOC101348328	A0A2Y9DZU0	A0A2Y9DAT1	Vesicle-associated membrane protein 4.	Complexin-2.	0.436
LOC101342354	LOC101348396	A0A2Y9DZU0	A0A2Y9D906	Vesicle-associated membrane protein 4.	Syntaxin-16 isoform X1; Belongs to the syntaxin family.	0.998
LOC101342354	LOC101350087	A0A2Y9DZU0	A0A2Y9RJH1	Vesicle-associated membrane protein 4.	Vesicle transport protein USE1.	0.447
LOC101342354	LOC101352194	A0A2Y9DZU0	A0A2Y9DKX8	Vesicle-associated membrane protein 4.	Beta-soluble NSF attachment protein isoform X1.	0.779
LOC101342354	LOC101353091	A0A2Y9DZU0	A0A2Y9E5F5	Vesicle-associated membrane protein 4.	t-SNARE domain-containing protein 1.	0.439
LOC101342354	LOC101354105	A0A2Y9DZU0	A0A2Y9RJK9	Vesicle-associated membrane protein 4.	Syntaxin-18 isoform X1.	0.626
LOC101342354	LOC101356256	A0A2Y9DZU0	A0A2Y9E3A0	Vesicle-associated membrane protein 4.	Synaptosomal-associated protein 29.	0.689
LOC101342354	LOC101357896	A0A2Y9DZU0	A0A2Y9RHA7	Vesicle-associated membrane protein 4.	Synaptosomal-associated protein; Belongs to the SNAP-25 family.	0.978
LOC101342354	LOC101359695	A0A2Y9DZU0	A0A2Y9QIK4	Vesicle-associated membrane protein 4.	Syntaxin-17; Belongs to the syntaxin family.	0.548
LOC101342354	LOC101361633	A0A2Y9DZU0	A0A2Y9E0F3	Vesicle-associated membrane protein 4.	Syntaxin-5 isoform X1; Belongs to the syntaxin family.	0.987
LOC101342400	LOC101342354	A0A2Y9DGU8	A0A2Y9DZU0	Golgi SNAP receptor complex member 2 isoform X1; Involved in transport of proteins from the cis/medial-Golgi to the trans-Golgi network.	Vesicle-associated membrane protein 4.	0.705
LOC101342400	LOC101342605	A0A2Y9DGU8	A0A2Y9DUS7	Golgi SNAP receptor complex member 2 isoform X1; Involved in transport of proteins from the cis/medial-Golgi to the trans-Golgi network.	Alpha-soluble NSF attachment protein isoform X1.	0.842
LOC101342400	LOC101343174	A0A2Y9DGU8	A0A2Y9DKS3	Golgi SNAP receptor complex member 2 isoform X1; Involved in transport of proteins from the cis/medial-Golgi to the trans-Golgi network.	Syntaxin-8.	0.618
LOC101342400	LOC101347111	A0A2Y9DGU8	A0A2Y9E2V5	Golgi SNAP receptor complex member 2 isoform X1; Involved in transport of proteins from the cis/medial-Golgi to the trans-Golgi network.	Synaptobrevin homolog YKT6; Belongs to the synaptobrevin family.	0.997