33 items (Trichechus manatus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC101351968	chromodomain-helicase-DNA-binding protein 4 isoform X1. (1940 aa)
	LOC101345477	RE1-silencing transcription factor. (993 aa)
	LOC101355433	Metastasis-associated protein MTA1 isoform X1. (637 aa)
	LOC101342011	PHD finger protein 21B. (413 aa)
	LOC101353654	Breast cancer metastasis-suppressor 1-like protein isoform X1. (330 aa)
	LOC101351361	chromodomain-helicase-DNA-binding protein 5. (1817 aa)
	LOC101345568	Autoimmune regulator. (663 aa)
	LOC101345501	Transcriptional repressor p66-beta. (599 aa)
	LOC101340670	Histone deacetylase complex subunit SAP18. (172 aa)
	LOC101357517	Metastasis-associated protein MTA3 isoform X1. (1130 aa)
	LOC101355253	Histone-binding protein RBBP4 isoform X1. (430 aa)
	LOC101348489	AT-rich interactive domain-containing protein 4A isoform X1. (1279 aa)
	LOC101359005	AT-rich interactive domain-containing protein 4B isoform X1. (1312 aa)
	LOC101359018	Nuclear receptor corepressor 1 isoform X1. (2517 aa)
	LOC101358481	REST corepressor 3 isoform X1. (554 aa)
	LOC101343607	annotation not available (332 aa)
	LOC101357794	G protein pathway suppressor 2 isoform X1. (369 aa)
	LOC101354309	WD repeat-containing protein 73. (372 aa)
	LOC101350528	Histone deacetylase complex subunit SAP30L. (182 aa)
	LOC101357779	Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily. (482 aa)
	LOC101342476	Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily. (488 aa)
	LOC101341988	High mobility group protein 20A. (347 aa)
	LOC101361514	WD repeat-containing protein 26 isoform X2. (661 aa)
	LOC101349880	chromodomain-helicase-DNA-binding protein 3 isoform X11. (2001 aa)
	LOC101348090	REST corepressor 1 isoform X1. (478 aa)
	LOC101361870	Sin3 histone deacetylase corepressor complex component SDS3 isoform X1. (328 aa)
	LOC101347189	Histone-binding protein RBBP7 isoform X1. (425 aa)
	LOC101355889	REST corepressor 2 isoform X1. (523 aa)
	LOC101344565	Metastasis-associated protein MTA2 isoform X1. (668 aa)
	LOC101359304	Transcriptional repressor p66-alpha. (628 aa)
	LOC101343651	PHD finger protein 21A. (681 aa)
	LOC101361985	LOW QUALITY PROTEIN: histone deacetylase complex subunit SAP30. (217 aa)
	LOC101358866	Breast cancer metastasis-suppressor 1 isoform X1. (246 aa)

Your Current Organism:

Trichechus manatus

NCBI taxonomy Id: 127582
Other names: Florida manatee, T. manatus latirostris, Trichechus manatus latirostris

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC101340670	LOC101341988	A0A2Y9E7K7	A0A2Y9DIG9	Histone deacetylase complex subunit SAP18.	High mobility group protein 20A.	0.412
LOC101340670	LOC101342011	A0A2Y9E7K7	A0A2Y9R6Z9	Histone deacetylase complex subunit SAP18.	PHD finger protein 21B.	0.507
LOC101340670	LOC101342476	A0A2Y9E7K7	A0A2Y9DEC1	Histone deacetylase complex subunit SAP18.	Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily.	0.709
LOC101340670	LOC101343607	A0A2Y9E7K7	A0A2Y9R348	Histone deacetylase complex subunit SAP18.	annotation not available	0.544
LOC101340670	LOC101343651	A0A2Y9E7K7	A0A2Y9S0K7	Histone deacetylase complex subunit SAP18.	PHD finger protein 21A.	0.616
LOC101340670	LOC101344565	A0A2Y9E7K7	A0A2Y9DZD0	Histone deacetylase complex subunit SAP18.	Metastasis-associated protein MTA2 isoform X1.	0.487
LOC101340670	LOC101345477	A0A2Y9E7K7	A0A2Y9RMB1	Histone deacetylase complex subunit SAP18.	RE1-silencing transcription factor.	0.484
LOC101340670	LOC101345501	A0A2Y9E7K7	A0A2Y9E7E1	Histone deacetylase complex subunit SAP18.	Transcriptional repressor p66-beta.	0.609
LOC101340670	LOC101345568	A0A2Y9E7K7	A0A2Y9E133	Histone deacetylase complex subunit SAP18.	Autoimmune regulator.	0.545
LOC101340670	LOC101347189	A0A2Y9E7K7	A0A2Y9DX88	Histone deacetylase complex subunit SAP18.	Histone-binding protein RBBP7 isoform X1.	0.762
LOC101340670	LOC101348090	A0A2Y9E7K7	A0A2Y9DLA2	Histone deacetylase complex subunit SAP18.	REST corepressor 1 isoform X1.	0.583
LOC101340670	LOC101348489	A0A2Y9E7K7	A0A2Y9QJK2	Histone deacetylase complex subunit SAP18.	AT-rich interactive domain-containing protein 4A isoform X1.	0.945
LOC101340670	LOC101349880	A0A2Y9E7K7	A0A2Y9DK95	Histone deacetylase complex subunit SAP18.	chromodomain-helicase-DNA-binding protein 3 isoform X11.	0.548
LOC101340670	LOC101350528	A0A2Y9E7K7	A0A2Y9DB25	Histone deacetylase complex subunit SAP18.	Histone deacetylase complex subunit SAP30L.	0.806
LOC101340670	LOC101351361	A0A2Y9E7K7	A0A2Y9E125	Histone deacetylase complex subunit SAP18.	chromodomain-helicase-DNA-binding protein 5.	0.548
LOC101340670	LOC101351968	A0A2Y9E7K7	A0A2Y9RQJ1	Histone deacetylase complex subunit SAP18.	chromodomain-helicase-DNA-binding protein 4 isoform X1.	0.653
LOC101340670	LOC101353654	A0A2Y9E7K7	A0A2Y9R691	Histone deacetylase complex subunit SAP18.	Breast cancer metastasis-suppressor 1-like protein isoform X1.	0.740
LOC101340670	LOC101354309	A0A2Y9E7K7	A0A2Y9DA93	Histone deacetylase complex subunit SAP18.	WD repeat-containing protein 73.	0.682
LOC101340670	LOC101355253	A0A2Y9E7K7	A0A2Y9QI18	Histone deacetylase complex subunit SAP18.	Histone-binding protein RBBP4 isoform X1.	0.762
LOC101340670	LOC101355433	A0A2Y9E7K7	A0A2Y9R766	Histone deacetylase complex subunit SAP18.	Metastasis-associated protein MTA1 isoform X1.	0.501