(7 nodes) Peptidase M10, metallopeptidase network (Myxococcus stipitatus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AGC41879.1	Putative lipoprotein. (272 aa)
	AGC41880.1	Putative lipoprotein. (271 aa)
	AGC41881.1	Putative lipoprotein. (276 aa)
	AGC42163.1	Hypothetical protein. (485 aa)
	AGC44370.1	Hypothetical protein. (595 aa)
	AGC44394.1	Hypothetical protein. (294 aa)
	AGC44395.1	Hypothetical protein. (307 aa)

Your Current Organism:

Myxococcus stipitatus

NCBI taxonomy Id: 1278073
Other names: M. stipitatus DSM 14675, Myxococcus stipitatus DSM 14675

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AGC41879.1	AGC41880.1	MYSTI_00529	MYSTI_00530	Putative lipoprotein.	Putative lipoprotein.	0.484
AGC41879.1	AGC41881.1	MYSTI_00529	MYSTI_00531	Putative lipoprotein.	Putative lipoprotein.	0.463
AGC41880.1	AGC41879.1	MYSTI_00530	MYSTI_00529	Putative lipoprotein.	Putative lipoprotein.	0.484
AGC41880.1	AGC41881.1	MYSTI_00530	MYSTI_00531	Putative lipoprotein.	Putative lipoprotein.	0.741
AGC41881.1	AGC41879.1	MYSTI_00531	MYSTI_00529	Putative lipoprotein.	Putative lipoprotein.	0.463
AGC41881.1	AGC41880.1	MYSTI_00531	MYSTI_00530	Putative lipoprotein.	Putative lipoprotein.	0.741
AGC44394.1	AGC44395.1	MYSTI_03080	MYSTI_03081	Hypothetical protein.	Hypothetical protein.	0.816
AGC44395.1	AGC44394.1	MYSTI_03081	MYSTI_03080	Hypothetical protein.	Hypothetical protein.	0.816