(43 nodes) Metallopeptidase, catalytic domain superfamily network (Myxococcus stipitatus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AGC41500.1	Hypothetical protein. (745 aa)
	AGC49106.1	M12A family peptidase. (445 aa)
	AGC49098.1	Hypothetical protein. (472 aa)
	AGC48977.1	M3 family peptidase. (634 aa)
	AGC48819.1	Hypothetical protein. (464 aa)
	AGC48417.1	Extracellular protease. (364 aa)
	AGC47713.1	M3 family peptidase. (650 aa)
	AGC47485.1	Hypothetical protein. (170 aa)
	AGC47060.1	Hypothetical protein. (271 aa)
	AGC47006.1	Hypothetical protein. (540 aa)
	AGC46908.1	Hypothetical protein. (309 aa)
	AGC46906.1	Hypothetical protein. (311 aa)
	AGC46904.1	Hypothetical protein. (314 aa)
	AGC46902.1	Hypothetical protein. (317 aa)
	AGC46701.1	Protease B. (457 aa)
	AGC45701.1	Hypothetical protein. (291 aa)
	AGC44966.1	M13 family peptidase. (717 aa)
	AGC44395.1	Hypothetical protein. (307 aa)
	AGC44394.1	Hypothetical protein. (294 aa)
	AGC44370.1	Hypothetical protein. (595 aa)
	AGC43989.1	Hypothetical protein; Belongs to the MtfA family. (243 aa)
	AGC43957.1	Peptidyl-dipeptidase Dcp. (737 aa)
	AGC43849.1	Protease B. (304 aa)
	AGC43807.1	Extracellular protease. (367 aa)
	AGC43806.1	Extracellular protease. (368 aa)
	AGC43525.1	Protease B. (402 aa)
	AGC43483.1	Hypothetical protein. (499 aa)
	AGC43440.1	Hypothetical protein. (350 aa)
	AGC42940.1	Protease B. (255 aa)
	AGC42924.1	Protease B. (650 aa)
	AGC42915.1	Protease B. (445 aa)
	AGC42904.1	Hypothetical protein. (416 aa)
	AGC42747.1	M3 family peptidase. (682 aa)
	AGC42163.1	Hypothetical protein. (485 aa)
	AGC41975.1	FG-GAP repeat-containing protein. (786 aa)
	AGC41926.1	Metalloprotease MEP1-like protein. (296 aa)
	AGC41881.1	Putative lipoprotein. (276 aa)
	AGC41880.1	Putative lipoprotein. (271 aa)
	AGC41879.1	Putative lipoprotein. (272 aa)
	AGC41645.1	Hypothetical protein. (753 aa)
	AGC41636.1	Hypothetical protein. (175 aa)
	AGC41609.1	Metalloprotease MEP1-like protein. (301 aa)
	AGC41388.1	Hypothetical protein. (383 aa)

Your Current Organism:

Myxococcus stipitatus

NCBI taxonomy Id: 1278073
Other names: M. stipitatus DSM 14675, Myxococcus stipitatus DSM 14675

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AGC41388.1	AGC41500.1	MYSTI_00029	MYSTI_00141	Hypothetical protein.	Hypothetical protein.	0.642
AGC41388.1	AGC41645.1	MYSTI_00029	MYSTI_00287	Hypothetical protein.	Hypothetical protein.	0.692
AGC41500.1	AGC41388.1	MYSTI_00141	MYSTI_00029	Hypothetical protein.	Hypothetical protein.	0.642
AGC41500.1	AGC42904.1	MYSTI_00141	MYSTI_01569	Hypothetical protein.	Hypothetical protein.	0.578
AGC41500.1	AGC46701.1	MYSTI_00141	MYSTI_05422	Hypothetical protein.	Protease B.	0.412
AGC41609.1	AGC41879.1	MYSTI_00250	MYSTI_00529	Metalloprotease MEP1-like protein.	Putative lipoprotein.	0.484
AGC41609.1	AGC41880.1	MYSTI_00250	MYSTI_00530	Metalloprotease MEP1-like protein.	Putative lipoprotein.	0.452
AGC41609.1	AGC41881.1	MYSTI_00250	MYSTI_00531	Metalloprotease MEP1-like protein.	Putative lipoprotein.	0.446
AGC41609.1	AGC43806.1	MYSTI_00250	MYSTI_02490	Metalloprotease MEP1-like protein.	Extracellular protease.	0.559
AGC41609.1	AGC43807.1	MYSTI_00250	MYSTI_02491	Metalloprotease MEP1-like protein.	Extracellular protease.	0.487
AGC41609.1	AGC46904.1	MYSTI_00250	MYSTI_05627	Metalloprotease MEP1-like protein.	Hypothetical protein.	0.466
AGC41609.1	AGC46908.1	MYSTI_00250	MYSTI_05631	Metalloprotease MEP1-like protein.	Hypothetical protein.	0.489
AGC41609.1	AGC47060.1	MYSTI_00250	MYSTI_05784	Metalloprotease MEP1-like protein.	Hypothetical protein.	0.440
AGC41609.1	AGC48417.1	MYSTI_00250	MYSTI_07145	Metalloprotease MEP1-like protein.	Extracellular protease.	0.515
AGC41645.1	AGC41388.1	MYSTI_00287	MYSTI_00029	Hypothetical protein.	Hypothetical protein.	0.692
AGC41645.1	AGC42904.1	MYSTI_00287	MYSTI_01569	Hypothetical protein.	Hypothetical protein.	0.645
AGC41645.1	AGC46701.1	MYSTI_00287	MYSTI_05422	Hypothetical protein.	Protease B.	0.430
AGC41879.1	AGC41609.1	MYSTI_00529	MYSTI_00250	Putative lipoprotein.	Metalloprotease MEP1-like protein.	0.484
AGC41879.1	AGC41880.1	MYSTI_00529	MYSTI_00530	Putative lipoprotein.	Putative lipoprotein.	0.484
AGC41879.1	AGC41881.1	MYSTI_00529	MYSTI_00531	Putative lipoprotein.	Putative lipoprotein.	0.463